RNA id: TU108938


Basic Information

Item Value
RNA id TU108938
length 1003
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G87269
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23371190 ~ 23372192 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGCAATGCTGCTCCCTGACATCAACTATACAtgctttgcaaataaataaaacaactggcCATTGTATAGGGCACATTCTTTGCAAACAACTAAGGTATGCCTGTAGGTAATAGGGAAGGCATCCAGAACTGGGTTTCCCATTAGCTGCTTGCTGCACACTTGCTAACATCCCTACTTTGCTTAACATTCACAAATACAAGCCCCACAGAAATATTTTCCATATCCCAGGGAACACACATTGAATTCGGAAAAGAATTTGGCTTAGAAACATAGCGGGACATAGCAGGGCAGACTTCCTTCAGAAATATAACAGTCTCTCAGAGCATTTCCAAGCGATAAGATAATTAAGGAGCATTTTACTACCTGGGAAACCAGTCTGTTACTGTTATTCAGGAAGGAAAATACTTTAGTGCATTTGGGGCTCTTGGTTAAGAAGAAGTTAATGTGCATGGActgcaaacaagcaaaaactGTTTGTAACTGAACAGAATTATATAAGAACAATTCCTTGTTTtgggaagaaaaatacatatatgcagTTTAACCAGATATGTCCTCTCCACTTCTACGCCTAACCTGAGATTTATTAGgcatataatgtattttaccaattaaaatattgacCACACCATAGCTACTTCATGTACCTAAAATGGACTGTATAAATCTGTGCAACGGAGCTGAACATTTTATCATTTGCTCAGAGCCATGGATAATTGGGAATAGTCAGTAACTTTAATCAGTTGATCATATTTTCATCTATTTGACTTACAGTTATCTtagcatacaaaataaaaaaaacattacaatcagAACTTCCTGTCaccatgcacattttaaaattatattaaaatatttaattacagcaaTGCATAACATTAAAGGATATCGATTCACATGCTAAATCTAAACTCTACAACAGTAACattatagatttaaaacatttcaaatcaaatgagTATAACATGCAACCAgcaataagtatttattatatgaAATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108931 lncRNA downstream 40846 23329325 ~ 23330344 (-) False AMCG00021630
TU108898 lncRNA downstream 173347 23197581 ~ 23197843 (-) True G87234
TU108868 lncRNA downstream 265002 23093588 ~ 23106188 (-) True G87218
TU108838 lncRNA downstream 280079 23089602 ~ 23091111 (-) True G87203
TU108827 lncRNA downstream 295175 23075634 ~ 23076015 (-) True G87193
TU108952 lncRNA upstream 61024 23433216 ~ 23481900 (-) True G87282
TU108957 lncRNA upstream 110780 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA upstream 110780 23482972 ~ 23488212 (-) False G87287
TU108976 lncRNA upstream 123127 23495319 ~ 23498761 (-) False AMCG00021634
TU109118 lncRNA upstream 704707 24076899 ~ 24077107 (-) True G87427
AMCG00021630 mRNA downstream 38222 23329627 ~ 23332968 (-) True AMCG00021630
AMCG00021629 mRNA downstream 67444 23265750 ~ 23303746 (-) True AMCG00021629
AMCG00021627 mRNA downstream 109010 23254939 ~ 23262180 (-) True AMCG00021627
AMCG00021619 mRNA downstream 210199 23156889 ~ 23160991 (-) True AMCG00021619
AMCG00021621 mRNA downstream 218869 23145357 ~ 23152321 (-) True AMCG00021621
AMCG00021634 mRNA upstream 122833 23495025 ~ 23498563 (-) True AMCG00021634
AMCG00021637 mRNA upstream 294401 23666593 ~ 23667210 (-) True AMCG00021637
AMCG00021635 mRNA upstream 299233 23671425 ~ 23673576 (-) True AMCG00021635
AMCG00021636 mRNA upstream 305639 23677831 ~ 23685846 (-) True AMCG00021636
AMCG00021639 mRNA upstream 325452 23697644 ~ 23698829 (-) True AMCG00021639
TU108932 other downstream 32706 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 210213 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2287620 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2646310 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2973407 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 2031458 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2533252 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2719062 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2779913 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 3539282 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile