RNA id: TU108960


Basic Information

Item Value
RNA id TU108960
length 2328
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G87287
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23482972 ~ 23488212 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gctTAAGCTACAAACCTTTATTGAAAAAGTATTTACAGGAGTTAAAACCACACATTCTAtactgttaaacaaaacaatcaaaaagatCAAAAGATCAAACCTGGCACTTTTAGGAATCTGTGCCTCTCAACAGGATATTTAAACCTCACAAAACAAGCATAACggacaaaagaaaaagatcGTTTTCAGTAAAGGGAAAGGTTTTAAGCAAAGGGGCTAGAGTGAACATCCCTGCATTATTTACATCTGGGATTTCTTGAAACTCCACTAAATCTAATTTAAAGATCACTTGAAAGgaaaatactgtacatcaatGGAAAATTACACTGGTAAAATGAGCACAAtgcactttaataaaatacaaaacagagcagGGGTATTCTCCACcctagtcctggaggaccccctaacCTACAGATTTGTATCCCAACTGAGCtctccattacttaattgaacccttaagtaatttgcatttaaattgtgtaactgataagtTGGTTCCTTGGAAAGCTCCTTATACAACTTATACTTAAAACCCCTGTTTACAATGAAAAGGCTCCCATTTAGAAAATGGTAAGTTACaataaaggttcaattaagtaattgagagctccactggaacacaaaccaaaccctgTGCCTGCAGGCCTGTAATCCTGCCAGGTCTTGAGGGCATGGCTCACAGATGCCCTCACAGCCTGCCAGGATTACAGGCCTCCAGGCACAGGGTTGCACACTAACACCAATGTTGGCCTCCAGGACCAGAATTCCCCATCCATATCTGCAGAAACTCATTAGTAGGGTCAGGCAAGATGCAGGTTGGCCCTCTATGGTCCAGACACTTGTTGAAAGTTTAACAGCAGAAGAGTCAGGTGGAGTGCGTGTATGTGGGGGAGAGAGGATGAATAGGATAATCTGAAGGGGGCATCGTAAATTTCCAACTGCTGTGGAGAGGGGGATAGgagcaagagaccactgcacacTTTAAAAGCTCAACTAAACGCACAACTTCGTAGAAAACGTTTCTAAAAAAAGTTCTAGGTTTTATTgatcaatttattaaaatgtgataaCAGGACATCTtggatttaaatgcaaaatacaaactgGTAGCAATGAGACCTcatcacatgtatttattccatCTTCAATTAAAGTGGCTTTTAAACAGCAAGAGATTCATTTCTCCCCCCCAACCTCCCGTCCCACTCCTCTACCAaattcagaaaacagaaaaaaaaaaattcaggaCATGCGAGAGCAGACGACTCCGGAAACTACCCACTGGCTCACAGCTAAGcatctaaaaacaaatgtgcccTACATGTACACTaacattctaaaatatatacaaatgcaaCCATCAGACAGCACTGCTCTGCACTAGGATGCAACTGGTATTCCCTGCAAAAtaaggaggaaaaaacaaaaacaaaataaaagttgccACTGAAGTGGGCGTTACTGCTGTTCGTCCTCTGGACACGAATGCCAAGTCAGTCTCTCTTCGTAGAAAGCAATTACGACCTGAGGACATTTCACGTTGGCTTCTTTGGCTGGTACTAAGTCCGCTTCATCCGATTCTTTCCACTTCATTAAGAACATGAGTTCCCCACTGCTGTCCGTCGCTCCGATGATTCGCTCTGGATCAAGGTTACGAGCAAAACCCCGCGGTTTGTCACTTGCCTCCTTTTTCTTCTTGGCTTTGCTTTCTTCCGACTCGCTTTCGGAAGCGGACTTCCTCTTGTTGGAATCTGGTTTTTCGACTGTGGTTTTCTGTGAGGCCAGGAATGCGTCGATTAATTCTGGGCAGTCAAGGTTCTCCTCCGGCTCCCAGGTGTTGTCGGCATCAGTAAAGCCCTTCCACTTCAGATAATATTCAACTTTGCCATTCACAACCCGACGATCAATCACTTTCTCCACAACAAATTCTTCAGGTTCAACCTCCTCTGCCTTCTTGCCTTTTCCATTTTGCTTCTTTCCCATTGTGCCCTTTGAATCTCCTAAACAGTGCGAGGACGACAACAACAATGCTCTCTTCCCGTCTTTGCTGTATCTACTGGCGCCAAAACCCCCGACCTCTTATAGCGCTACCAGTCCACCGCTACCCCCGCGCAGCGCTTTTAACCTACTCTTCACGGCCTAAATAAACTCGATAGGCCAAAGTCAACCCGTGTTCTCCCTTACGGGTGTAGTCCCCCgatgtgtaaaatataaatattacacgaatgtatttatgtatttctctttcTAGTGTACGtttgatataaatgtaattctCCAAACCGGACGCGCAATTTGCGTGCGTAACTGCAAATGAACGTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108952 lncRNA downstream 1072 23433216 ~ 23481900 (-) True G87282
TU108938 lncRNA downstream 110780 23371190 ~ 23372192 (-) True G87269
TU108931 lncRNA downstream 152628 23329325 ~ 23330344 (-) False AMCG00021630
TU108898 lncRNA downstream 285129 23197581 ~ 23197843 (-) True G87234
TU108868 lncRNA downstream 376784 23093588 ~ 23106188 (-) True G87218
TU108976 lncRNA upstream 7107 23495319 ~ 23498761 (-) False AMCG00021634
TU109118 lncRNA upstream 588687 24076899 ~ 24077107 (-) True G87427
TU109120 lncRNA upstream 592524 24080736 ~ 24133311 (-) True G87428
TU109159 lncRNA upstream 711324 24199536 ~ 24201701 (-) False AMCG00021662
TU109205 lncRNA upstream 790425 24278637 ~ 24279387 (-) True G87495
AMCG00021630 mRNA downstream 150004 23329627 ~ 23332968 (-) True AMCG00021630
AMCG00021629 mRNA downstream 179226 23265750 ~ 23303746 (-) True AMCG00021629
AMCG00021627 mRNA downstream 220792 23254939 ~ 23262180 (-) True AMCG00021627
AMCG00021619 mRNA downstream 321981 23156889 ~ 23160991 (-) True AMCG00021619
AMCG00021621 mRNA downstream 330651 23145357 ~ 23152321 (-) True AMCG00021621
AMCG00021634 mRNA upstream 6813 23495025 ~ 23498563 (-) True AMCG00021634
AMCG00021637 mRNA upstream 178381 23666593 ~ 23667210 (-) True AMCG00021637
AMCG00021635 mRNA upstream 183213 23671425 ~ 23673576 (-) True AMCG00021635
AMCG00021636 mRNA upstream 189619 23677831 ~ 23685846 (-) True AMCG00021636
AMCG00021639 mRNA upstream 209432 23697644 ~ 23698829 (-) True AMCG00021639
TU108932 other downstream 144488 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 321995 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2399402 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2758092 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3085189 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1915438 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2417232 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2603042 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2663893 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 3423262 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile