RNA id: TU108992


Basic Information

Item Value
RNA id TU108992
length 3067
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G87313
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23673892 ~ 23678603 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgattttgctattttgttttagGTATTCTTATAATATTATTGGTAAGTAACATTTCCTGTCGGTCCTCCATTACAAGTAAATTAATAGAGGTAGATTATTCCAAATGAAGCATACAGAACCGAGAAGCtgacagaataattaaaaaataagagatGGGTAGAAAGCCTATTTCCCGTATGCTGTGCATATATGTAACCTTTTCAATACATCATAACGCATTCCTTGTTTTGTTGCAGATGACATTGTCCCAGTAGGCACGGGACCAATTCATGCgccttttgaaaaaacaaaaccctgcgAGATCTCAATCGAAACCGAGTCTTTTATCCCAGAATTTCGTTGCAACAACCAAATGTTATaaccagaatttaaaaaaaacgagTGAAGCATATCCTAATCAATTGGTAATGTGGTgttgattgtattgtattcttcaTAACGAATGAGCCAAAGGGTTTCGAGTATTAGATTAGTCTATTCtccaaatgaaataaaataaggttTGTGTTCACGTTTGTAGTTTCTTTTcgagatatgttttttttctgaaacgACCAAGAGTTGTAGGCCTCTCCCAGTTTATTGCTTATAGTCCAAACAAAGACGCTGGGAAGCCTGCACGCTATCAATCTTGCTCGCCAAAAGGTCTGACAGCTTCTTGCCctaagaaacacatttaaacctCCTAACTCTCTCTTAGATCAAATGTAGCCTGGAAGAGAGGAAGGACACTGAGCACTTATTTCAGAAAAGTCTAAATACCTTCTCACATACCAGGACTCcctgttattttaaatagaaaatacataaaaccatAACATCTCTGGGAAGGCTATACTGGGAAATTCgtggaggAAAAAAGGGCAACATAATGATCAATTGTTCTTCATGTTTCCTGCTAACCATATGTCACGGAAAGCAACGTGTTCCAGATACTTTGTTAAATATGtgaatctaaaaataaagaagaagcTaaAAGCTTTCCAGCCCTTATATTCATCGTGATGTGTCTTTGCGGAGGTTTGGGCGtaagaacacacacaacacagcgtACACTGCTTCAGAATTACATACTAGAAGAAGTAAAGGCTGTAAGagtaaagcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcggtcTATTTATCTAAATATCCATGTATCAGATTTAGGTACATAAATACTATGTACTTTCTGTTATTATCTATTAAATATGTCTAAATATATTAGGATGGGGACACCGTACACCAGGTCAGATTTACGCATATAATTTTAGTAATGATTATTTAATTGGAATCACAACAATATATTTCGATATCTGAACTGAGGCACCTTCATCATCGtcatcactattattattgttattgttatttttattgttatcattaagTGAAATGAGCTGCGCTGTGTGATGTACATTaataaagatacatttatatattttaattatttgttttatttcttagaaCTGGAGCAGCATGGAATGTATGAcagtaaaaacagaaattataatatttgaaataatttttcaTGTAAAGCCTTTAACAAGTACAAATTGTGTTGGAGTcaatggtttgttttcctgatctTATTGcatgatacatattttttttttcctttgtcatcATTAAAAATCAATCGGGTGGGAACTGACTCGGGCAACATTGTCGAATATTTATCAGGGGTTTTAAAGTAGGCCAGACAGAACAAAGGGCCTCTTTCCTGTaccatttgccttttttatataaatatgagcAGAGGGGGATAAATAATACTTTAGACATTTAGAATATTATATTTcgcaagaacaaataaataatgtccatCAGAATACAAACAGTGGAGGCTGAAGCTCCTGCCGAGAAAAACCTCTCTGTTCAAGAGCCGCTGATTCGTACAGCCTCGAGAAGtgcaacaaaatgcaaacaaaattcTTCAAATGGGATAAATAAGAGACAAATTCACATTGAAGCAACTTAATAATTTTGTTCATATACCCTGTTTTgacataaaaaagaacaaaataaagggaaaaataaagataatatatGGCGTCGAGGTACCACTTGAGTCCCCAGACCAAAAGTTCATGAGATTCGATAACACTAACAAAGCTATAGAGAAATCCAAGCAACAAGTATTGCAACTACATCACACATTAAACTATAAATGTAGGTAGGCtactgaagaaaagaaagatatgGGTTCAGAGGTAACATCATGAAAAAAGGTGAGAGGATATTCCACCACAGCCAACGTGTCCGTTACAGATGCGTCAACTTGGGCGCTTCCTGAATTCTTCCCTGAGACGAGTGGTGAGGAGTCAGATCTGTGTATGTGGGGTGTGGGTCGCAAGGTCCATGGTGGTGGTTGCTGGCCATGTTGCCCGCGCCATTGTAGTCCATGTTGGCTGATGATGGGTGAGGGAGGTGTGTCAAGCCAAAAAGGGAGGGCCCGGAATTGGCAATGGGATCTATGTAGCTGCCTCCCACATACACCGGGCTCCCCTGCAGATGGGAAGTCCCATAGCTGCCATTGCCTTGAAGGGGGTGCGTGTCGTATTCAGGCGTAACGGCGGCAGTCCCGGCGTATCTCTTTTGGGGAGGCGGGCAATTATTTAGAGGCGCCGGATATGACGTGGAGAGAGGGTATGAATTTTGATGAGGCTTATTGTATGACGTGGGGGACTGGGGTTCATACGGCACACTGTTCACCAGCGAATGCATAGAGTTCAGGTATCCTCCTGCTGAAGACCCCGGGGGGACGGGGCTCCTCGGGGACTGTCCTCCGGGGGAAGGCATCATCCCCTTGCCCTTTTGATCCTTTTTGTACTTCATCCGGCGGTTCTGAAACCAGATTTTGATCTGTCTCTCCGTGAGGTTGAGCAGATTGGCCATTTCCACCCTCCGCGGCCGGCAAAGGTAGCGGTTGAAGTGAAACTCCTTCTCCAGCTCCACCAGCTGCGCGCTGGTGTAGGCGGTGCGGGCTCGCTTGGACGCGGCGGAGCCGGGGGGGCTCTTCTCCCCGGGACAGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108961 lncRNA upstream 89556 23489081 ~ 23584336 (+) False G87288
TU108962 lncRNA upstream 181800 23489307 ~ 23492092 (+) True G87288
TU108897 lncRNA upstream 476023 23197621 ~ 23197869 (+) True G87233
TU108854 lncRNA upstream 482139 23145004 ~ 23191753 (+) False G87215
TU108853 lncRNA upstream 521544 23149014 ~ 23152348 (+) True G87215
TU109000 lncRNA downstream 8722 23687325 ~ 23692148 (+) True G87321
TU109088 lncRNA downstream 351241 24029844 ~ 24032117 (+) True G87402
TU109111 lncRNA downstream 402133 24080736 ~ 24139508 (+) False G87423
TU109112 lncRNA downstream 402133 24080736 ~ 24101214 (+) True G87423
TU109140 lncRNA downstream 516525 24195128 ~ 24198798 (+) False AMCG00021657
AMCG00021631 mRNA upstream 160154 23506699 ~ 23513738 (+) True AMCG00021631
AMCG00021632 mRNA upstream 185684 23482955 ~ 23488208 (+) True AMCG00021632
AMCG00021633 mRNA upstream 193340 23470032 ~ 23480552 (+) True AMCG00021633
AMCG00021628 mRNA upstream 304572 23343890 ~ 23369320 (+) True AMCG00021628
AMCG00021625 mRNA upstream 420686 23213371 ~ 23253206 (+) True AMCG00021625
AMCG00021638 mRNA downstream 101167 23779770 ~ 23782827 (+) True AMCG00021638
AMCG00021645 mRNA downstream 175316 23853919 ~ 23883152 (+) True AMCG00021645
AMCG00021648 mRNA downstream 277326 23955929 ~ 23974179 (+) True AMCG00021648
AMCG00021651 mRNA downstream 342262 24020865 ~ 24029573 (+) True AMCG00021651
AMCG00021655 mRNA downstream 450396 24128999 ~ 24135047 (+) True AMCG00021655
TU108421 other upstream 2437812 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 2442404 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 2442404 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 2508860 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 2564524 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 495906 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 1598173 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 2473465 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 5099712 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 5382284 29060887 ~ 29065339 (+) True G88276

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000321_01227049_01234989.mRNA True 2237 mRNA 0.47 7 CI01000321 1226351 ~ 1235145 (+)