RNA id: TU109000


Basic Information

Item Value
RNA id TU109000
length 3436
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G87321
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23687325 ~ 23692148 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgttgttatttttaatcaggGAACAGAAGAATATTTGATATTATAATTAGACTACTGAAGATTAAAGAACTGCACAATCCCGTTCCCAAATGGGGAGATAGCTGTAGGCTTTGAAAGTCTCGTTagtattttctaaaatacaatctgagaaaatatatattgcagcatgcagatatatagatattgtTATGGTTATAGATATAGATGGCTATGCATCTGCCATTTTTTCTGAAACCCCTAAGCCTTTTCCACTGACCTTTGCCTTGAACAGCAATAACTCACCCCAGTAATGAACAATCAACGGAAATAcctcaaaataaaatccatccTCTTAAAGCAGGGGCTCCTTTTCTCTCCGGTCCGAGAAACATATCCATCCGTGAGAGCAGAAACCGACATCCAGAAACGAGCCCTTTCCCAGTAAAGTATATAAAGCCCTGACTCTTAGCAGAAAGTGGAAACGCGCAATCCCAGCCCAAGACAGCCCGGGTCTCCGCTCCAAATGGCACAATAATGCGCCGGATTACGCGCTCACGTGGTGCTACGTCAACTTAAAgccttttatttgaatttggGAATCATTAAAGGAACTATTCATTGCCAGCTTAATCTTTtactgaaaaaaagaaagttaaggCACAAAACAGAATTGCATATATTTTAGCACAGGAGATGAGCCTGCATGTTacgtttgattgtttttccccaACAAAATATAATCCATTTGAAGGAGTCTTTCACCAACTTTGATGAAGCTGCACTTGCAAACACGGAATTGGAGCTGAACGTCGAAGATGATCTTTGCACCGAATCACCTGGAAGTTCATTGAAATCTGGGGAATGTGTACATGTATGCATTTGCCTtaatttcttcttctcttcGCTGATATATGTGTGCATCCTCCCCTAGCTATCAGTGAGACCTGGAGAATGTCTTGGACCTTCAAATGCCACCGCAATCGTGGATGGATAGCAGACTCGCCCTCCCTCCGGAGTGAAGGTTTTTCTTAACCTGAGGATTTTTCTGACGTCTGAGACACACATGGGTTGCAAATCGATATGATAGGAGAAAGACGATAACAGGAATGAAGAACGGCTGCacacaaatgctacatttggTGGGAATACGTGTGCGTGGTTTATTTGGATGTTTCAACAGCCTTTCTGTCGTTGTTTCATTTTCCCCCTGCCCTCTGTAACCCGAATTAATCGATAACCGTATATTCCACTCATCGAGTCCTGTATGCAGCAGTAATTGCCTATACAGTACCATCCCTGGACCCTTGCCAAACGGTAATACATATCTTCACACAATGTTGACATTTAGAGCTGTAACGTAAAAGCTAAGGTTACCGATTCAGTCAGCTGCAAATATGGCTCTTTCGCCTGCCTTTCGCCTTCTGGGTTTCAGGTCGCAGACGTCAAGGCTATGAAGTAGGCTTGGACAGGATATAGCGCCCACGCTTTCCCTGTGAGGGTCTGCTGTAGGGTGCAGGTTTTGGTCACTTCTACAAATTTATCAATTAAGGCTTTTGACTAATGACAAAAGCATGGGATTTTACACTGCTTTCCACAAAATACGGACATAGATCAATTTGCATTATTAGCATCGCCGTTTTATACATCTGATCTgatagaaatatgttttttttttaataattaatcattcagcttgttttttattttatttgtgggtGTATGGTAAACTCACaggtaaatgtaaatatgtattaaatcaaaacgcTAGAAGCGTACAAAAACTAGTATATTAGAGGATTTTTCCAAATAAGATGATCACTCGctataaacaaatcaaataaccTATAACTGACTTTCCTGAAGCAAAGGACACTCAGTGGGTTTAAGTCGTGGATTTTAAAGTCCGTTGTCCTATAATTTCCCTAAATATCTTTGGTTCAGAACAGGCTGTGTTAAGTTTCAAATGCTCGGGAGTTCATCATAACCTTCTTCTTCTGAGATGTAAAGGGAAAGGAAGAGCATCACAAAAGTGTCAATAATGTCAAACCTTTTCAAAGCGAAATACTACAATTTGAGTTGTTTTCTTATGAGATTAAATGctgaatatttatattgttttaatgcacaaaACAACTTTGGATTGATTTAAACTTTGCAAACCAATGTAAGGATGCTTTTTaatcagttaatttaattaaaaacatgacgCAGCGATTCATTTGCTTTAAAAGGGACTTAAGGGTCGACTTTGGGAAAACCTATgagattttatttcttctacACATTttagtataaaaacaataaataagatccatttatataacttatatattatatatccgAGACTGTCAGTTTTTTCTCACGATACTCACGGGGAAAATGCAATTCTGCgttctttatttaatgcaaagagagaaagaaacttAACATCTATATAGAAAACCCTGTAAATTTTTAACAAATGCAAGAGACGTTTCTTTTGTTATTCAGTTCATCAAGTCCCACCGACTTGTGGATGTGCTAACCGCTGTTAGTCTCCACAAAGAAATTCACACGGCTGGAGCGGGAGATATCTTGCACATTGTCAATTATTTATCTGATTTCTTAATAAACTTTTAAACTGTTGAATACTGGGAAAAATACGcgattttaaaaaacagtagAAAATTCGTTAGATACAAGGTCTTGACTTTCTCTTGCGTGTGcctctgtatatttatttatattacagcaCAGAATCGATTTATTTCAGATCAATATTCGTTGGAAGAACAGCGAAGAATGTGTATAGGTTgactattaatgtatttattttaaaacgaGCATTGCAAATTTCCATTGTTTTAATAGTGGATTATTTCATGTAATATATTAAAGGACGTGTGATTCTGTTTAACCTATTCTTATACTggtatttaatgtatacatttttacaaaaaaaaaaaaaaaaaacatttaaacagggACATTTTTGtcataataaagaaacaaacaaaaaagaaacacccTGCTTTTGAAAAACGTCGTTTTCTGTGTGATTTGTAGACTTTAATCTCAGAAATATTGTCATGGTTGAATGTCATTTGTGCAGTTTTGacctattattttaattctctaCTCAcaattgtggtttgttttagtattaACTTTTGTGTTTCCACAACGCTTTCGGTAtctctgttttatttacatgtaaCTATCTCTCAGTCTTTATTACTTCCGATCTTCcgatattttgttttcaattttcattATGATATAGATACTGCCACGGACaataactgtaaaatacatgtttccCATTTGAATGTATGTGTCTTCGTGCTGGACACATAATCTGACGTTATTATTGGACTCTACCCAatgtcaaaatattttgtagcaGAGCGTAAACGTAGTCAATTCACTTTCTTTCACTTGTACAATATTGATGTTTatacaggaaataaaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108992 lncRNA upstream 8722 23673892 ~ 23678603 (+) True G87313
TU108961 lncRNA upstream 102989 23489081 ~ 23584336 (+) False G87288
TU108962 lncRNA upstream 195233 23489307 ~ 23492092 (+) True G87288
TU108897 lncRNA upstream 489456 23197621 ~ 23197869 (+) True G87233
TU108854 lncRNA upstream 495572 23145004 ~ 23191753 (+) False G87215
TU109088 lncRNA downstream 337696 24029844 ~ 24032117 (+) True G87402
TU109111 lncRNA downstream 388588 24080736 ~ 24139508 (+) False G87423
TU109112 lncRNA downstream 388588 24080736 ~ 24101214 (+) True G87423
TU109140 lncRNA downstream 502980 24195128 ~ 24198798 (+) False AMCG00021657
TU109160 lncRNA downstream 524226 24216374 ~ 24218824 (+) True G87464
AMCG00021631 mRNA upstream 173587 23506699 ~ 23513738 (+) True AMCG00021631
AMCG00021632 mRNA upstream 199117 23482955 ~ 23488208 (+) True AMCG00021632
AMCG00021633 mRNA upstream 206773 23470032 ~ 23480552 (+) True AMCG00021633
AMCG00021628 mRNA upstream 318005 23343890 ~ 23369320 (+) True AMCG00021628
AMCG00021625 mRNA upstream 434119 23213371 ~ 23253206 (+) True AMCG00021625
AMCG00021638 mRNA downstream 87622 23779770 ~ 23782827 (+) True AMCG00021638
AMCG00021645 mRNA downstream 161771 23853919 ~ 23883152 (+) True AMCG00021645
AMCG00021648 mRNA downstream 263781 23955929 ~ 23974179 (+) True AMCG00021648
AMCG00021651 mRNA downstream 328717 24020865 ~ 24029573 (+) True AMCG00021651
AMCG00021655 mRNA downstream 436851 24128999 ~ 24135047 (+) True AMCG00021655
TU108421 other upstream 2451245 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 2455837 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 2455837 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 2522293 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 2577957 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 482361 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 1584628 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 2459920 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 5086167 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 5368739 29060887 ~ 29065339 (+) True G88276

Expression Profile