RNA id: TU109088


Basic Information

Item Value
RNA id TU109088
length 2274
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G87402
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24029844 ~ 24032117 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTagctgttgttttgttagttgtttttttatcaaagGACTGTTGTAGAATTAATCATAACCAACTGAAGCCTCTAGTTTTTGTTTAGGCCTTAAACATTTCCTACTCTCATACTCCAAGTTGTAAGgtcaaaaacatttgtttcagtattATGACATTTCAAAAACGCAGATTCCAAAATATCACCAAACGGTTTTCAATAATGCCAAACGGACCTCTTACCAACATTTCCACATCTGTTACCAATCCTGATGAAGACAGGTGTCAAAAAGTGAATTAGAGATCTCTACCAGCACTAGTTGTGATtaacagtgtgagagagagagagagagagagagagagagagagagagagagagagagtgagagagagagcgcgttTGCTTTTATGTCTGAGAGggacaaaaaattaaataagaagaTTCATATACAGTAATAAGGGAAGCACTTACAGTGAGTAAATGTTACTTCTCATGTTGTAAGCTGCAAATCCAGCAAGGGACAATGtagatgtggaaaaaaacataattcagagatttaaaaaaggGGCAAATTCTGCACTGGGGCAAAAAGCTTTCCTCTACATCGAATTGAGTTACTAATTCCATTTGGTGAATGTTGTACCTGTCAGATACTGTGTTTGTAccataatgtattgtatttttcatcagCTTTAACACTCTGGGATATTCTTGTAGTTATTTGAACACCATTGGTGCAGTATCCAGTTTGGATGCAAATGTTTAAAAGCTTTATGATGTGAACAGTATAAAATCTAAACTCATCACAATGTCAAACGTATACACATGGATATCCACAATTCCATAGTGTCTGTCATGTCTGCAGAATGGTTTGTTGAAGCACTGTGTAGTGCTCTATGTAAATTATAAGCATCTTTCTAAATTCCTAGGTTGGTTTCTAAactaacatgtattttaagGCTTCCAATacattcagtacatttaaaagtatactCTCAGTAGTTTCAGATGTCTGGGAATACAAAAAACGCActctttaaaactttattttttgctaCAAGCCAGCATTTTGCTTTCTCCAACTGTGCTACTTTGAGTCAGTTATCATAGGTTTTTGGTTTGATATGTGCAATGTACAGAATAGATAGAGAATAGATAGAGAATAATAGAgaagtacttttatttttgtattaacagTTAATTTTGATGGGATCATAAAAGGTTCCTTCTATTACAAAGGGATGTTTTTACTTAGACCAGTAGGTGGACTATGTTGACTAACAGATGACAGAAATAGAGAGAAAAAGCAATCTGGTGCAAGTGACATTATGTGAAGCATATTCAGCAAAAAGAAGAACCTTGCTCAAAAGTATGGTTCATTCATTTTCCCCGGTAATTTAAAGACCTAGCTCTCATTCTTAAATAAAGCCTTAATATTTAGTAAGTGTTTGGATGCATTACATTGTGATGTAGACAGGTGCACCACATGGAATAGCTTTAAAAGTTCAAGTTTGCCCCAAGTTAGGGATCTTGGAGCAGCAAAGATACCTTCTTTATCAATTGTGCGACTGGCAACGCCCTCCCGAGAGTCTGAGTGTCAGAATCTAATTGTTCACTTCATTTCCCTTCTTATGTTTCGTTAATCGTCTCCCAGAAGCTGTCAGTTTTCATTATGTAAATGCTGAGTGAAGTAAAGTACAGCAATGTAGCAGGAGCCCAAACCCACTCTGTACCAAGGACCTGTTTTATTCACTTGTGTCTGTGACCACGGTGCCCGCAGTCCTGTCATTTGCACCCAGCTCAGTTTCATATCCAGTGCAAATCGTGAAATGGAGAACCAATATACCTTTCAATTGACATCTCCTCAAACacgaaaaagaaaatatgtgcaTGTGAATGATAATAAGGACCAGCTATGCAAAAACCTCTCTGTTGACACTCTGTAGTTACCGTTCCAAAGACCTCTGCAAGCCTAACCACAGTGAGCttcctgtgttttgtgtatctcacccaaaatcttttttttgctgtttttgttctgtgCCCCAGGTTATAGCTGTATGCATAAACATAGGAAAATATTATTTCCGGAGGTATTAGCTACTGGTAGAGCCCTGCCAGtgctaaataattattatagaaAGAGTCCGCATGAGGTCTGATCTCCTGACAGCCTCTGTTTAAGGGCTGCAGCAGTTGCTTTTTGGATATCGCATTAATTCAATTCTGAAGTGCACTGTCAAGCATCTAATAGCTTTCATACTTTATACCTATCAAGGACCAATAAATGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109000 lncRNA upstream 337696 23687325 ~ 23692148 (+) True G87321
TU108992 lncRNA upstream 351241 23673892 ~ 23678603 (+) True G87313
TU108961 lncRNA upstream 445508 23489081 ~ 23584336 (+) False G87288
TU108962 lncRNA upstream 537752 23489307 ~ 23492092 (+) True G87288
TU108897 lncRNA upstream 831975 23197621 ~ 23197869 (+) True G87233
TU109111 lncRNA downstream 48619 24080736 ~ 24139508 (+) False G87423
TU109112 lncRNA downstream 48619 24080736 ~ 24101214 (+) True G87423
TU109140 lncRNA downstream 163011 24195128 ~ 24198798 (+) False AMCG00021657
TU109160 lncRNA downstream 184257 24216374 ~ 24218824 (+) True G87464
TU109188 lncRNA downstream 228845 24260962 ~ 24261617 (+) True G87482
AMCG00021651 mRNA upstream 271 24020865 ~ 24029573 (+) True AMCG00021651
AMCG00021648 mRNA upstream 55665 23955929 ~ 23974179 (+) True AMCG00021648
AMCG00021645 mRNA upstream 146692 23853919 ~ 23883152 (+) True AMCG00021645
AMCG00021638 mRNA upstream 247017 23779770 ~ 23782827 (+) True AMCG00021638
AMCG00021631 mRNA upstream 516106 23506699 ~ 23513738 (+) True AMCG00021631
AMCG00021655 mRNA downstream 96882 24128999 ~ 24135047 (+) True AMCG00021655
AMCG00021654 mRNA downstream 119947 24152064 ~ 24172881 (+) True AMCG00021654
AMCG00021656 mRNA downstream 142286 24174403 ~ 24178092 (+) False AMCG00021656
AMCG00021657 mRNA downstream 151091 24183208 ~ 24198827 (+) True AMCG00021657
AMCG00021658 mRNA downstream 188804 24220921 ~ 24232757 (+) True AMCG00021658
TU108421 other upstream 2793764 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 2798356 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 2798356 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 2864812 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 2920476 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 142392 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 1244659 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 2119951 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 4746198 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 5028770 29060887 ~ 29065339 (+) True G88276

Expression Profile