RNA id: TU109111



Basic Information


Item Value
RNA id TU109111
length 422
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G87423
representative False

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24080736 ~ 24139508 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgtcaaagttgctcttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaattccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatactAAGCAAAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109088 lncRNA upstream 48619 24029844 ~ 24032117 (+) True G87402
TU109000 lncRNA upstream 388588 23687325 ~ 23692148 (+) True G87321
TU108992 lncRNA upstream 402133 23673892 ~ 23678603 (+) True G87313
TU108961 lncRNA upstream 496400 23489081 ~ 23584336 (+) False G87288
TU108962 lncRNA upstream 588644 23489307 ~ 23492092 (+) True G87288
TU109140 lncRNA downstream 55620 24195128 ~ 24198798 (+) False AMCG00021657
TU109160 lncRNA downstream 76866 24216374 ~ 24218824 (+) True G87464
TU109188 lncRNA downstream 121454 24260962 ~ 24261617 (+) True G87482
TU109237 lncRNA downstream 219996 24359504 ~ 24360909 (+) True G87525
TU109347 lncRNA downstream 794915 24934423 ~ 24935826 (+) False AMCG00021676
AMCG00021651 mRNA upstream 51163 24020865 ~ 24029573 (+) True AMCG00021651
AMCG00021648 mRNA upstream 106557 23955929 ~ 23974179 (+) True AMCG00021648
AMCG00021645 mRNA upstream 197584 23853919 ~ 23883152 (+) True AMCG00021645
AMCG00021638 mRNA upstream 297909 23779770 ~ 23782827 (+) True AMCG00021638
AMCG00021631 mRNA upstream 566998 23506699 ~ 23513738 (+) True AMCG00021631
AMCG00021654 mRNA downstream 12556 24152064 ~ 24172881 (+) True AMCG00021654
AMCG00021656 mRNA downstream 34895 24174403 ~ 24178092 (+) False AMCG00021656
AMCG00021657 mRNA downstream 43700 24183208 ~ 24198827 (+) True AMCG00021657
AMCG00021658 mRNA downstream 81413 24220921 ~ 24232757 (+) True AMCG00021658
AMCG00021659 mRNA downstream 134587 24274095 ~ 24276540 (+) True AMCG00021659
TU108421 other upstream 2844656 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 2849248 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 2849248 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 2915704 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 2971368 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 35001 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 1137268 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 2012560 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 4638807 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4921379 29060887 ~ 29065339 (+) True G88276

Expression Profile