RNA id: TU109118


Basic Information

Item Value
RNA id TU109118
length 209
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G87427
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24076899 ~ 24077107 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGACCATTGTGCATACAGAGAGGGTGAAAGAGACACCCCGTGATTTCttccaggaaaacaaaaacctcgCTCTCTGCAGCCACCTGACGTGCTTCACGTCACCGGCAGGAAAAGGCTCTTTCACAAGCCTGATCTGCTGACTCTGGATGCGGCGCCGGTGCGGTTATAACAGCCCGGCTTTAAACCAGCGCAGCCGGCGGGAGCAGAG

Function

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108976 lncRNA downstream 578138 23495319 ~ 23498761 (-) False AMCG00021634
TU108957 lncRNA downstream 588687 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA downstream 588687 23482972 ~ 23488212 (-) False G87287
TU108952 lncRNA downstream 594999 23433216 ~ 23481900 (-) True G87282
TU108938 lncRNA downstream 704707 23371190 ~ 23372192 (-) True G87269
TU109120 lncRNA upstream 3629 24080736 ~ 24133311 (-) True G87428
TU109159 lncRNA upstream 122429 24199536 ~ 24201701 (-) False AMCG00021662
TU109205 lncRNA upstream 201530 24278637 ~ 24279387 (-) True G87495
TU109241 lncRNA upstream 282559 24359666 ~ 24363369 (-) False AMCG00021668
TU109295 lncRNA upstream 468975 24546082 ~ 24548123 (-) True G87573
AMCG00021652 mRNA downstream 2927 24056803 ~ 24073972 (-) True AMCG00021652
AMCG00021653 mRNA downstream 22027 24052590 ~ 24054872 (-) True AMCG00021653
AMCG00021650 mRNA downstream 134284 23934484 ~ 23942615 (-) True AMCG00021650
AMCG00021649 mRNA downstream 184253 23885292 ~ 23892646 (-) True AMCG00021649
AMCG00021646 mRNA downstream 228408 23844671 ~ 23848491 (-) True AMCG00021646
AMCG00021662 mRNA upstream 122441 24199548 ~ 24210205 (-) True AMCG00021662
AMCG00021660 mRNA upstream 138761 24215868 ~ 24220678 (-) True AMCG00021660
AMCG00021661 mRNA upstream 160168 24237275 ~ 24256623 (-) True AMCG00021661
AMCG00021663 mRNA upstream 184794 24261901 ~ 24277596 (-) True AMCG00021663
AMCG00021666 mRNA upstream 202485 24279592 ~ 24307071 (-) True AMCG00021666
TU108932 other downstream 738415 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 915922 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2993329 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 3352019 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3679116 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1326543 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 1828337 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 2014147 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2074998 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 2834367 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile