RNA id: TU109120


Basic Information

Item Value
RNA id TU109120
length 615
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G87428
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24080736 ~ 24133311 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaagctgttctggtggctcgtggtgcaccttactgagacacttgtatttgtcacccgtctgtatgtgattaaaatttaaatacagttcATAAGAAGTCATGGCCTCAAATGAGCCATACATCCTTCAATTTAAgtttcaatgtaaatgtttcattcATTCACCAGGCAAAATAGGCGAATGCAACCGAAGagaattacatttcatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatggttgttggtgccagacgggccggtctgagtatttcacaatctgctcagttactggaattttcacgcacaaccatttctagggtttacaaagaatggtgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagctgatagaagagcaactttgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109118 lncRNA downstream 3629 24076899 ~ 24077107 (-) True G87427
TU108976 lncRNA downstream 581975 23495319 ~ 23498761 (-) False AMCG00021634
TU108957 lncRNA downstream 592524 23482972 ~ 23488212 (-) True G87287
TU108960 lncRNA downstream 592524 23482972 ~ 23488212 (-) False G87287
TU108952 lncRNA downstream 598836 23433216 ~ 23481900 (-) True G87282
TU109159 lncRNA upstream 66225 24199536 ~ 24201701 (-) False AMCG00021662
TU109205 lncRNA upstream 145326 24278637 ~ 24279387 (-) True G87495
TU109241 lncRNA upstream 226355 24359666 ~ 24363369 (-) False AMCG00021668
TU109295 lncRNA upstream 412771 24546082 ~ 24548123 (-) True G87573
TU109365 lncRNA upstream 854131 24987442 ~ 24989739 (-) True G87627
AMCG00021652 mRNA downstream 6764 24056803 ~ 24073972 (-) True AMCG00021652
AMCG00021653 mRNA downstream 25864 24052590 ~ 24054872 (-) True AMCG00021653
AMCG00021650 mRNA downstream 138121 23934484 ~ 23942615 (-) True AMCG00021650
AMCG00021649 mRNA downstream 188090 23885292 ~ 23892646 (-) True AMCG00021649
AMCG00021646 mRNA downstream 232245 23844671 ~ 23848491 (-) True AMCG00021646
AMCG00021662 mRNA upstream 66237 24199548 ~ 24210205 (-) True AMCG00021662
AMCG00021660 mRNA upstream 82557 24215868 ~ 24220678 (-) True AMCG00021660
AMCG00021661 mRNA upstream 103964 24237275 ~ 24256623 (-) True AMCG00021661
AMCG00021663 mRNA upstream 128590 24261901 ~ 24277596 (-) True AMCG00021663
AMCG00021666 mRNA upstream 146281 24279592 ~ 24307071 (-) True AMCG00021666
TU108932 other downstream 742252 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 919759 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 2997166 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 3355856 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 3682953 20395612 ~ 20397783 (-) True G86649
TU109433 other upstream 1270339 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 1772133 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 1957943 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 2018794 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 2778163 26911474 ~ 26919844 (-) False AMCG00021723

Expression Profile