RNA id: TU109160


Basic Information

Item Value
RNA id TU109160
length 1730
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G87464
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24216374 ~ 24218824 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTCTGTGAAACATCTGGACTGGTAATTGCAATATTGAGTCAAAATGGCATGACATGCAGAAACTCTAAAACATAGGTTAATGATTAACACAAAAATACGACCAGTGTGGTAAAAGGCTACACCAGAGGGAGACACCCCTGTACTGAAAACATACTGTGAAAAGACATCTTAAAAAGCAACATATAGGGCAGTACAATGCTGCGTTTCAGAAACCGCATTCCTACATGTTCCAGGCATTCTTATGGGATGTGTGTGAAAAATTAGTATGGTGACATCATTACATCATGCCAGGCTGGTCTATCACTGGGAGGATGAAGAGGAAAATGACTGAATGATGCCACACAGTGGTGTACAGGTGATCTGCACTCTAAATAATTTGCCTTTCCTCACCCTAGAAATACTGAAGTATATTTGAATAAGATTTACCGGTATCATGCATTTGGCTGATcacacaacattgtgtgtttgaaCAACTTTCATACCGATTTAAGACAGCAATTTGAATCCATGCCCATGATAATCAGACACACAGATCCACATTATTGTTAGATAAGGCTCAAATAAAATTACATGGATAAAAGCTTTCATATTAGAGCGATCTAGTACAACCAAAGGCGACGTTTGTATTGGAAAAAGGAATTCAGATTTTTAATGGGAAAGTTCAAActcaaataacaaataaaaatacccaACCTACTCACTATTTATCCACCACTGTTATGCAAAATCCTATTGTGCGCTTTCAGTTATTGATGTCATACTTCAAAGTTCATTAATCATGTTTGCCACAGGTCACTGAAATTTTGGCAATTAATCCTTTAATGTGCTTAcagggctttttattttttattttttcttatacaGCACTGTGCTCCTGTACAAGAGCAACTGGGAGAAGTAAAGACATTAGCTATAAATATTACAGTGGTAGGACTAGGACAAAACGTGGTTTATTTCCTATTAGGGAACACTGTTATGAATAATCCCATTTCCACAATAACTCGGTTGACagatttttcatattaaatcagGGCTTTGAGCATTGGTCCTCAGATCAcatcaaagtttaaaataaatcacaaataaatgtaaacatttttaacaactaAATCCTATAACCAATCTAATcttaatgtgaaaaatacaacatttactttaattattgtGGAAAATACATAGGCCTGAAACGATCTCCGTTTGTTTCTATGTGACATCTGGAATACCCCATAACCTATGTACTTTGGAAGTTATCCTTTACATCTGATAACAGTGGAATGGTCACATGCAGACACTTCTGTCTAAAAGACAATATTACCTCAAGATCAGTACACGTCTTATAAAAATCCAACAAATATATCAGAGTAAAGGAGCCCAAAATACCGACACAGTTCATATTCAAAAGCCACTTTGGCATCATaaaatcttgattttttttttttttttacaattcgTCGTGCTTGTAGGTAAACTCTCTTGCAGATATATAGCCATCGTTATCTTCATCTTCTTTCTTGAAAATATCTTCCACCATGACTTCATGCTGAGTGTCATTGGGAGAATAACCATGTCTCTCAAACTCCTTCCTCAGATATTCCTTTACCTCCACTCGAGACAGCTTCCAGTCATCGTTAAGGTCCATTTGCTGAAATGATTCATGAGACCTGGGTCCATTTCTGATCTCCATCAATTCAATGTCAAATATCAGTGTGCTATCAGGTGGAATTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109140 lncRNA upstream 17576 24195128 ~ 24198798 (+) False AMCG00021657
TU109111 lncRNA upstream 76866 24080736 ~ 24139508 (+) False G87423
TU109112 lncRNA upstream 115160 24080736 ~ 24101214 (+) True G87423
TU109088 lncRNA upstream 184257 24029844 ~ 24032117 (+) True G87402
TU109000 lncRNA upstream 524226 23687325 ~ 23692148 (+) True G87321
TU109188 lncRNA downstream 42138 24260962 ~ 24261617 (+) True G87482
TU109237 lncRNA downstream 140680 24359504 ~ 24360909 (+) True G87525
TU109347 lncRNA downstream 715599 24934423 ~ 24935826 (+) False AMCG00021676
TU109409 lncRNA downstream 1148151 25366975 ~ 25372339 (+) True AMCG00021682
TU109467 lncRNA downstream 1310500 25529324 ~ 25529585 (+) True G87704
AMCG00021657 mRNA upstream 17547 24183208 ~ 24198827 (+) True AMCG00021657
AMCG00021656 mRNA upstream 38282 24174403 ~ 24178092 (+) False AMCG00021656
AMCG00021654 mRNA upstream 43493 24152064 ~ 24172881 (+) True AMCG00021654
AMCG00021655 mRNA upstream 81327 24128999 ~ 24135047 (+) True AMCG00021655
AMCG00021651 mRNA upstream 186801 24020865 ~ 24029573 (+) True AMCG00021651
AMCG00021658 mRNA downstream 2097 24220921 ~ 24232757 (+) True AMCG00021658
AMCG00021659 mRNA downstream 55271 24274095 ~ 24276540 (+) True AMCG00021659
AMCG00021665 mRNA downstream 124028 24342852 ~ 24353253 (+) True AMCG00021665
AMCG00021664 mRNA downstream 153043 24371867 ~ 24377488 (+) True AMCG00021664
AMCG00021671 mRNA downstream 225483 24444307 ~ 24457362 (+) True AMCG00021671
TU109135 other upstream 38384 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 2980294 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 2984886 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 2984886 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 3051342 21158624 ~ 21165032 (+) False AMCG00021551
TU109403 other downstream 1057952 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 1933244 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 4559491 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 4842063 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 5159751 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile