RNA id: TU109433


Basic Information

Item Value
RNA id TU109433
length 1873
RNA type TUCP
GC content 0.40
exon number 2
gene id G87674
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25403650 ~ 25406538 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtgtCAACAAGAGACTTTATTGAAGGATCacattgaaaactgaaattctgccaaggggaaaaaacatgctAATTGTACCTTTTACAAGCAGTCAATATGTAAAATGtcttttgtaattaattatatagcACAAAAAAGAACAGCTAATATTGGAAAAAGAAACTAACCATTTACTTAAAAGATGCttattgccttttcttttttctatctGTACCAAGATAACTTACAacagcaaaaaaggaaaaaaaaacaaaaaaacaaaaaaaaacagaacgaaaacaaaactgaaataaaagacTGAATAAAATCTGCATTAGAAATACCCATCACGATCCTCATTACACCCCgcccctgcccccaccccctgcccaaAACCTATTCATAAGCAGCTCTTTCCATCACAGACAAGTTACACGGGAACAGACATCTCTGAATTATGTGGCATATCTCTTTGTCCACTGTCTGGCTATTCTGTCATGCTCGGCTCTGTTGGTCATGTATTGAGTTGCAATGCTTCCAACGAGTGGATCAGCtgtgaagaacaaaaacacagaaacagcacAGGGCTGGGTTAGGCAAGTCCTGCGCTAGGgtgaatgaaaacaatttaatgaaACACCATGCTGACACAAGCCTAACTCCCATGCGGCTACATGGAACTGAAATGTGAAGTTTTCCAAGAAAAGTCAGGCTTACACAATCTGCAGTTCCAGGTTGACTAAACACACATGACTTTCAGCTACTTTGTATGTTTTCTACATTTACTGATAACAGACAAAGGCCACCATAAGCTcacttaataaatacatacttgtAATTTGTTCCTCTGTTAATTTTACACCCaacatttgcaatgtaattgtAGACAAACGAAAATGTGGCAAGTTATACAAACGTCTTAAccactattttttatttatggctAAGACGCTTTTGAAATGTCTTAAATGCGTCACTGCAAACTTACTGAGTTTTGGTCAGATTTTACTCATTTTCATTGAGGTAATGTCATTAACAATACTCATGTACAACTGGatgggtaaaaaaaagaaaagaaaaaaagaacctAAAATCCAAAGAGGAACTCAATTTGACAGTAGCCCTTCACTGTAATTATATGCCAATAAGGGGAAAAGTTGgtcaacaaagaaaacaaataaatcattaaaatacatgtcGATAGGCCTGGAACACAACTTGTTTACTCCCCAAGGGTCAGGCTTCCCCATTCTCTCTCCGCTTCTGAAAAGAACCTACAGCAGTGGGGAACTTAATCTCCTTTCATCCACATCCAAAATGAGATTCGGCACTCAGAAATCTGGGAGGGTGCCAGCCAGTGAACACAAGAATGCTGCACCTACTCTGGGACGGGCAGACGGGCCCTCTGCTGAGGCAGCCAGCTGCGTCCTGAGCACAAACACGCGAACCTGGTCTAAATCTGCTCTGTGCAAACACACACTATCACTCTTTATTAGTGGCCATGAGGGAAATACAAATAGCAAAcggaataaacaaatcaaagaacaaAGCCTGTCTTTCTTGATCTGAGATTAATGAAACCTTGACACGTAGAATTAAACGGCTAATTtgaacagttttttattttattaaaccacCAAGCTTGATTGGTGTTTTTAGGACCTTGTCCTTACCAGGATTACAGTCTGTGAGGAGGGAGCAGATGGACAGCAGGATTACAGTCTGTGAGGAGGGAGCAGATGGACAGCAGGACCTTGGAGATGGTTAGCGCTGGGCTCCAGTTGTCCTTTAGGATATCTAGGCAGATCACCCCCTGGCTGTTGATGTTACAGTGGTAGATTCTCGTCCGGAAGGTCACCTAATAGAACCCACAGGACAGTTAAAGACGGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109358 lncRNA downstream 409408 24988401 ~ 24994242 (-) True G87622
TU109365 lncRNA downstream 413911 24987442 ~ 24989739 (-) True G87627
TU109295 lncRNA downstream 855527 24546082 ~ 24548123 (-) True G87573
TU109241 lncRNA downstream 1040281 24359666 ~ 24363369 (-) False AMCG00021668
TU109205 lncRNA downstream 1124263 24278637 ~ 24279387 (-) True G87495
TU109455 lncRNA upstream 5866 25412404 ~ 25415088 (-) False G87694
TU109456 lncRNA upstream 5866 25412404 ~ 25460562 (-) True G87694
TU109470 lncRNA upstream 124935 25531473 ~ 25531759 (-) True G87707
TU109480 lncRNA upstream 250844 25657382 ~ 25657793 (-) True G87717
TU109482 lncRNA upstream 270445 25676983 ~ 25677417 (-) True G87719
AMCG00021681 mRNA downstream 199749 25202404 ~ 25203901 (-) True AMCG00021681
AMCG00021680 mRNA downstream 318568 25074347 ~ 25085082 (-) True AMCG00021680
AMCG00021679 mRNA downstream 390890 25007690 ~ 25012760 (-) True AMCG00021679
AMCG00021677 mRNA downstream 416690 24975268 ~ 24986960 (-) True AMCG00021677
AMCG00021675 mRNA downstream 601317 24766785 ~ 24802333 (-) True AMCG00021675
AMCG00021686 mRNA upstream 164 25406702 ~ 25411562 (-) True AMCG00021686
AMCG00021691 mRNA upstream 276232 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021690 mRNA upstream 299038 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021696 mRNA upstream 312819 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021695 mRNA upstream 467353 25873891 ~ 25884232 (-) True AMCG00021695
TU108932 other downstream 2065166 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2242673 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4320080 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 4678770 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 5005867 20395612 ~ 20397783 (-) True G86649
TU109596 other upstream 498906 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 684716 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 745567 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 1504936 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 3375264 28781802 ~ 28783281 (-) True G88242

Expression Profile