RNA id: TU109456


Basic Information

Item Value
RNA id TU109456
length 1281
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id G87694
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25412404 ~ 25460562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttgttttGTACCATCGAAAAAGTGTCGTTTATTAGATGAAATATACAAGCACTGCAGCAATTAGCGGTAACGAGGCAGCTGCAGGGTGTTGCGTCGCCTCCAGGCAGCACGGCGAGACCCTCCAATGGTGAGGTGGAACTTGTGGCCCTTGCCCAGGCCGCGGCTCTTCTTGCCGGCTGACGTCAGCCCACGCATCTCTCTGTGCTTGTGGACAGGCTTTGTGATCCATTGGGCATCAGGGTTGCGTCTGATGGCCTTGTGGAATGGATCGACGAGGATGACCTCAAAGAACTTGTAGGTGGAATCTTCACCCACCCAGTAGGAGTTCAAAACCCTCAAGCCCCCGCAGTGACGGCCAGCACGCTCTCAGCCACAGACTGCAGGCTGCGGGCAAACTTGATCTGGTTGACACCATGGTGGACAGGTTTACCATAGGTGGCTCCCTTGGGCACGGGGCGCTTGCGACCACCACGGCGCACACGCACACGGTAGATGACGCCTTGCTTTGCCTTGTATCCCAGCCTGCGGGCCTTGTCGGGTCTGGTGGGTCTAGGAGCCCGGTGCAGGCCGGACAGCTGGCGGTACTGCCAACAGCGGACCCGGAGCAGAAAGCGCATCACATCGGACTGCTTCTTCCTCCATAGCTCCTGCATGTACTTGTACGCTCCCATTTTGGTCTAAACTAAGAGAGGGAAACCGGTCAATTTTAAGTACCACTGTACAGAAACCAGCATTAACAAAATGAGCTTCCTTTGCCACCGACCACTAACCCGCTCTCTCAACACCTGGAAACAAACCCGGCTCTGGCAGTAACGCGTTTCACGGAGACGCAGCGGCTGCGCTACAGCAGTGCGAGCAGCCATGTTACCTGCAGGCCGCGCCGAGGAGCGCCAGCGCACCTCACTCAGCGTCAAACACTTAACGGATTAAATCGAAGATGGAGCAGTTTGTAAGACCGGTGGAAATACACGGTAAAACAAATCAGAGCAGGGAGCCATGTTGCTCACTCACTTCCACTATACTGGCCATTACACGTAACCTGCATCTTTCCCAAAAGTGCAATGACCATTAATCTCTCATTTTTCATGGTAACGATAAAATAACGGTTACATCGAAGTGCTTGGAGTGTCCTCTGTTTAATTCCAAAGTGTTAAGAGCCGATGGCAACGTTTAATAACAACAGTTATGTGGATTATACAGACAGCGAAAAAGACAGAATCTTTCTTACATGATGGCGTACCAGccggaaagagagagagaactatcCCATCATGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109358 lncRNA downstream 418162 24988401 ~ 24994242 (-) True G87622
TU109365 lncRNA downstream 422665 24987442 ~ 24989739 (-) True G87627
TU109295 lncRNA downstream 864281 24546082 ~ 24548123 (-) True G87573
TU109241 lncRNA downstream 1049035 24359666 ~ 24363369 (-) False AMCG00021668
TU109205 lncRNA downstream 1133017 24278637 ~ 24279387 (-) True G87495
TU109470 lncRNA upstream 70911 25531473 ~ 25531759 (-) True G87707
TU109480 lncRNA upstream 196820 25657382 ~ 25657793 (-) True G87717
TU109482 lncRNA upstream 216421 25676983 ~ 25677417 (-) True G87719
TU109483 lncRNA upstream 217625 25678187 ~ 25681020 (-) True G87720
TU109528 lncRNA upstream 308834 25769396 ~ 25769896 (-) True G87756
AMCG00021686 mRNA downstream 842 25406702 ~ 25411562 (-) True AMCG00021686
AMCG00021681 mRNA downstream 208503 25202404 ~ 25203901 (-) True AMCG00021681
AMCG00021680 mRNA downstream 327322 25074347 ~ 25085082 (-) True AMCG00021680
AMCG00021679 mRNA downstream 399644 25007690 ~ 25012760 (-) True AMCG00021679
AMCG00021677 mRNA downstream 425444 24975268 ~ 24986960 (-) True AMCG00021677
AMCG00021691 mRNA upstream 222208 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021690 mRNA upstream 245014 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021696 mRNA upstream 258795 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021695 mRNA upstream 413329 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021699 mRNA upstream 502352 25962914 ~ 25976336 (-) True AMCG00021699
TU109433 other downstream 5866 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2073920 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2251427 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4328834 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 4687524 20721884 ~ 20724880 (-) True AMCG00021534
TU109596 other upstream 444882 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 630692 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 691543 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 1450912 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 3321240 28781802 ~ 28783281 (-) True G88242

Expression Profile