RNA id: TU109482



Basic Information


Item Value
RNA id TU109482
length 435
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G87719
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25676983 ~ 25677417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTTCGCACTGATGCTGCGCAGATCtgtaattttcattaaaatctttGGAAACATATGCGGTTTACTCGGTCTCCGTTTCCTTATGTAGATCTTTAAAGCCTCGAGGAGCGGCTCCTGCAACTTATCGACTTTTGCTGGTTCCTCCAGGTCTTGCCGGTCTGTGGATGAGATCACACCActgtcacacaaaataaataaggctGGGAACGAGCAACTTTGATTTGTGAAACTGTGACTTTCCATAAGATTATCCAAATGTGTAGGATGACTTTCATCAGAATATTCATGTGGATTTGATTTACAACAGAACTTTAAGAGCTTGACAAGGAATGACAAATGCCGTTATATTGCATTGCTATGCCAGTATGGTGTTTAATCTGAAATCGATTAAGTGGTTGCAATTATTAAAATTGCCAGAAGATGGCAGTGCTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109480 lncRNA downstream 19190 25657382 ~ 25657793 (-) True G87717
TU109470 lncRNA downstream 145224 25531473 ~ 25531759 (-) True G87707
TU109456 lncRNA downstream 216421 25412404 ~ 25460562 (-) True G87694
TU109455 lncRNA downstream 261895 25412404 ~ 25415088 (-) False G87694
TU109358 lncRNA downstream 682741 24988401 ~ 24994242 (-) True G87622
TU109483 lncRNA upstream 770 25678187 ~ 25681020 (-) True G87720
TU109528 lncRNA upstream 91979 25769396 ~ 25769896 (-) True G87756
TU109543 lncRNA upstream 125923 25803340 ~ 25809204 (-) True G87767
TU109586 lncRNA upstream 207917 25885334 ~ 25885977 (-) True G87800
TU109590 lncRNA upstream 219541 25896958 ~ 25898041 (-) False G87803
AMCG00021686 mRNA downstream 265421 25406702 ~ 25411562 (-) True AMCG00021686
AMCG00021681 mRNA downstream 473082 25202404 ~ 25203901 (-) True AMCG00021681
AMCG00021680 mRNA downstream 591901 25074347 ~ 25085082 (-) True AMCG00021680
AMCG00021679 mRNA downstream 664223 25007690 ~ 25012760 (-) True AMCG00021679
AMCG00021677 mRNA downstream 690023 24975268 ~ 24986960 (-) True AMCG00021677
AMCG00021691 mRNA upstream 5353 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021690 mRNA upstream 28159 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021696 mRNA upstream 41940 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021695 mRNA upstream 196474 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021699 mRNA upstream 285497 25962914 ~ 25976336 (-) True AMCG00021699
TU109433 other downstream 270445 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2338499 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2516006 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4593413 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 4952103 20721884 ~ 20724880 (-) True AMCG00021534
TU109596 other upstream 228027 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 413837 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 474688 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 1234057 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 3104385 28781802 ~ 28783281 (-) True G88242

Expression Profile