RNA id: TU109483


Basic Information

Item Value
RNA id TU109483
length 2834
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G87720
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25678187 ~ 25681020 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttaaaataaatatattttattattttgccagGAGATTCCATGGTAAAGGTAAACAgtatatgaacataaaaagcaTTGTTAATGTACAAACAAGAGCCAgtgaaaatacattacagagatagcaaatacaaaataatattccaACAGCAGGGTTTCAATGAACGGGCTCAGTCGGAACCGAATGAAAAGGTAGAGATGTCCGTGTGTACGGTCTGTTCCTGCGCCTGCGttagtgtttttaatgaatCCTAAGGTAACTGAatttgaaagtttctattaacGCAACGCTACAACACTTCTGGATAGCGATTCACTTATTCAGccaatttacatacattttcgGACTGGCTCAACCCAAAAAAAAACGACTGTCTGCTGCCGAACAGGAACGCGATTTTGCAGCGCTTGTGATGCGTCTGATATGTGGGATTCAGGGAGACACTTTCAACCTGAACAGGCCGCCGCGCTGCACTTCAGCGATGCGATTCAGTATCTCGGATTTGAAACAATACAACTAAATGGAGGAATGACATCACGAATCACAGGTATTACGATTTCGGTGACTTCAGCCTTTGTCTGTATGTGACGTAAGAGTGTTGAATATGAAGTTCATGTTTAAAAGTATTCTTTCTttcataatattgtattataagtatatatttagaCATATTACTTAAGATACATAATAACTGACTGCatttacaaacaatacatataagGTCCTCACCCTTTTGATGATATGTGTATTAGGGCTTATTATATCAGAGCATTCACATCATGTTTTGCTGTAGAAATCTGTATTTGATTTAGAACTACTTTGGTTTAATCTCCGACATGAATACAAAAGACCCGTTAAAAATTGTGCAGAAAATGCACAAATTCTGGGAAATGCAATGATAAAAACTTTTGAGCAGAATTGGCAGTTTTAGATACAAGCACCTGCTGTTTCtttaacaacaagaacaacaacaacaacaacaaacgtGAGCGCCGCCCTGTTCCCGGATGGACAGTCCCAGCCTGGTCGGTCTTATCTCAATAGAAACATTTACtccgaatatatatatattacatttgctGGGTATTTACAAATTGATGAGTTTTTAAATAGAGAAACTATATTTACACACTAGCGAAATTAAAAGTTAGAATAcggatagaaaaacaaacacatttaaatacaagcaAACCATTAGCCAGCATACCCGTCAGTGGGAATGGGGACAGAGGTCAGACATTCAGGCCGTGACAGGGATGCGGGTGGGCAGTTGCTCATTGTCCTCCCAGTGAGATATCACGACggactgtgctgctgctgctgctgttattcTTGTTGTGGCACAGTGCTCTGAGCCCCAGGCCGCAGGGTTGCAGATATTTTCCAagcttcctttttcatttttaaaccagtTTCTGCTCAATTGAAACGTGACATCGCTGGGACTGACTGAGTGAATCTTTTAGTCAGAAAGTTAGAATTCTTTTTAAGGCATTTATAGATTGGCGGGATGACAGGTTACCTAAATGTGTCTTTAACTCATCCCAGCACCTATCAGTCATCCAAACTCTTCACTTAAAAGTATTGGGGAAACGCATGAACAGTAAACCATGATGATGCTGTAACTGATATTATTTATAGAGTAGGGGTATTGGAAATGAACCAGTCAAATTAAACCACACTGATGCGCAATCTCTTAAACATTGAacttaacaaaataatttgcaagCTTTGAGTTTCTGATAAGTGCTATGAAGATTGCAAAAAACAAAGTTCAGTCTTGTAGAGGTCGGTTTCCTTTAGTGTATCGAGGAGCAAGAAACCACCTACTCACATTCAATCACATCTGTGTAGTGTTTTCTGGTTTAAATCAGCCTAACTACAGCAGTCACACACTGAAACACGTTGTTAACTGTTGCTAACATGACAGGCATCAACACTGCCTCACTGAGGGAACTGACTTTCTATCTGACGTGTAAAATAATGACCGCAGCGGTCAATAAACCTGTCTTCTCCAGTGGGACCATGACTGATATTTAAATCTGACTGATACTGCCAAACAACACTGATgggagaatttaaaaaaaggtgaaaaGTGATTTTAGATTACATTGGTCCATTCAAATCCACTCAGAATCTGTGCAAAGCCAGCTGGAAATAATTGAAATGGTCTCCTTATTGAAAATCCCTCCCTTGACAGCACCAGCACTTGTTGAGCAGAGCTGCAGATTATGCCGACAGAAGGGATAGAACACATTCTGCCACTTCTCTcgtcttttctttttgttcaatTGGAAAATAAGACCAAAAcccaattttaaatatatgaccAGATATAAAATAGACTTCCTTACTAAGCCAGAACATTCTATATAACCATTGTTTAGGACTTAATAAGCCAATTTTAACGTTGATGTATTGCCTTAAACATGGTCATATTTAAGACAATGGAAAAGCACCACAAAGTCATTAGAGAAACAAAGTTTAACCATATAATGGTATGTACAATGTATGCCAACCAGAAATATAGAGTAAAACCCACTTACCGAGCTCTGAACCCATCATGCAATGAATTTACATAATGTAAACCTGaagttttaaaccatttttagGGGTCTGAGCCACGGAGCTCTGAAATTCAAGGGTACAGTTTGAAGtccaaaaaaaaaggttaagaGCTTAATAAGACTTATACACAATGCATCGGTCCTTTCAGGCCTTagtgttgtaaaaaaaaaaaaaaaaagtaaagcaaagACAGAGCATCTTTGAAAACTTTTCCGGCCTTGTCTTCCCCCTGTATTGTGCAAAGGAATGTCTGAAAGAGTTTTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109482 lncRNA downstream 770 25676983 ~ 25677417 (-) True G87719
TU109480 lncRNA downstream 20394 25657382 ~ 25657793 (-) True G87717
TU109470 lncRNA downstream 146428 25531473 ~ 25531759 (-) True G87707
TU109456 lncRNA downstream 217625 25412404 ~ 25460562 (-) True G87694
TU109455 lncRNA downstream 263099 25412404 ~ 25415088 (-) False G87694
TU109528 lncRNA upstream 88376 25769396 ~ 25769896 (-) True G87756
TU109543 lncRNA upstream 122320 25803340 ~ 25809204 (-) True G87767
TU109586 lncRNA upstream 204314 25885334 ~ 25885977 (-) True G87800
TU109590 lncRNA upstream 215938 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA upstream 215938 25896958 ~ 25898041 (-) True G87803
AMCG00021686 mRNA downstream 266625 25406702 ~ 25411562 (-) True AMCG00021686
AMCG00021681 mRNA downstream 474286 25202404 ~ 25203901 (-) True AMCG00021681
AMCG00021680 mRNA downstream 593105 25074347 ~ 25085082 (-) True AMCG00021680
AMCG00021679 mRNA downstream 665427 25007690 ~ 25012760 (-) True AMCG00021679
AMCG00021677 mRNA downstream 691227 24975268 ~ 24986960 (-) True AMCG00021677
AMCG00021691 mRNA upstream 1750 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021690 mRNA upstream 24556 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021696 mRNA upstream 38337 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021695 mRNA upstream 192871 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021699 mRNA upstream 281894 25962914 ~ 25976336 (-) True AMCG00021699
TU109433 other downstream 271649 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2339703 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2517210 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4594617 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 4953307 20721884 ~ 20724880 (-) True AMCG00021534
TU109596 other upstream 224424 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 410234 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 471085 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 1230454 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 3100782 28781802 ~ 28783281 (-) True G88242

Expression Profile