RNA id: TU109528


Basic Information

Item Value
RNA id TU109528
length 501
lncRNA type intronic
GC content 0.34
exon number 1
gene id G87756
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25769396 ~ 25769896 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGCTTCACTTTACTCAGACTATTAGCAGCCCACCAAAAAGGAAATAATGCGGAAATTGGTATGATTAAGTGGGGTGATAGGAAGGTTACTAAGAATGGCTTACTGCAAGGGCTGAAAGATTATTGTTCATGATCTGTAATATCTGTACAGGGATTTTGTTTCAACTGCTCCTAAGGAATTGCTTTTATCATACATGTGAAATCTTGGATAATTTTCAACAATGGCACTTTCAGgcagacattttgtttaattttgtattgtagaAGGCAGTCAACTTCGTTAATTGCTTTTCTTGACACAAGACTTCAGTCTAAAAccttcataaatatttttttgcattgatttgaattgatAGTTATATgtcattacatgtattttaaagatctgTCAATGTTCTCAATAATCAGCACTTCACTTAACCCCCATTTCTTCATTCAGCAAGACTGCGCcttcaatattttcatataaacattaaaatgatgcTCATGGAACTTGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109483 lncRNA downstream 88376 25678187 ~ 25681020 (-) True G87720
TU109482 lncRNA downstream 91979 25676983 ~ 25677417 (-) True G87719
TU109480 lncRNA downstream 111603 25657382 ~ 25657793 (-) True G87717
TU109470 lncRNA downstream 237637 25531473 ~ 25531759 (-) True G87707
TU109456 lncRNA downstream 308834 25412404 ~ 25460562 (-) True G87694
TU109543 lncRNA upstream 33444 25803340 ~ 25809204 (-) True G87767
TU109586 lncRNA upstream 115438 25885334 ~ 25885977 (-) True G87800
TU109590 lncRNA upstream 127062 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA upstream 127062 25896958 ~ 25898041 (-) True G87803
TU109592 lncRNA upstream 127062 25896958 ~ 25898041 (-) False G87803
AMCG00021690 mRNA downstream 55630 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021691 mRNA downstream 64568 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021686 mRNA downstream 357834 25406702 ~ 25411562 (-) True AMCG00021686
AMCG00021681 mRNA downstream 565495 25202404 ~ 25203901 (-) True AMCG00021681
AMCG00021680 mRNA downstream 684314 25074347 ~ 25085082 (-) True AMCG00021680
AMCG00021695 mRNA upstream 103995 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021699 mRNA upstream 193018 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021698 mRNA upstream 255502 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021701 mRNA upstream 313882 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021700 mRNA upstream 321331 26091227 ~ 26105391 (-) False AMCG00021700
TU109433 other downstream 362858 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2430912 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2608419 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4685826 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 5044516 20721884 ~ 20724880 (-) True AMCG00021534
TU109596 other upstream 135548 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 321358 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 382209 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 1141578 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 3011906 28781802 ~ 28783281 (-) True G88242

Expression Profile