RNA id: TU109541



Basic Information


Item Value
RNA id TU109541
length 535
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G87765
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25832454 ~ 25832988 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aaacaatgtactttTCTGAATAAATTTAAGCAAACCAGTCCAGTAAAATAGTATTCAATCGAAATACTTAATGTAATGTTAGTTTGCTCCAAGGGCCTTCATAGAAGAGTTTCATGGAAGCAGCAGATTACCTGGAATAAAACCAATTTGAAGTGATGTTGCtccaaaacaacagcagatgGAAGCAGAAGACTAGGAACGTAAAATGAATGAGAGAGACTGGGACTTTCAAAGGACTGCATGTGGATAGCAAGGGTCTACACTGGAGATGCCAAGTAACTGGTATGAAGTTTGAATTCTTTTGAAACGGATTTTGGAGTTTATATTGTCTTTATCTAAATAAGAGGATTAAGAAAGCTAACAACACTCAGCTATGCAGCAGGTTCAGTTCAACGAGATCTTGTTTAAATGTCCAGTGACTTTATTGCAAAAATGTGGCTGCCCTGATTAGTTGTCTGACAGGAGAAACCAGGGTTGCTGTTCTCATAGGGATGtaatgtgtgtgaatatatatatataggcaaatATGTCTTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109518 lncRNA upstream 79201 25753053 ~ 25753253 (+) False AMCG00021692
TU109467 lncRNA upstream 302869 25529324 ~ 25529585 (+) True G87704
TU109409 lncRNA upstream 460115 25366975 ~ 25372339 (+) True AMCG00021682
TU109347 lncRNA upstream 896628 24934423 ~ 24935826 (+) False AMCG00021676
TU109237 lncRNA upstream 1471545 24359504 ~ 24360909 (+) True G87525
TU109559 lncRNA downstream 25961 25858949 ~ 25870195 (+) True AMCG00021693
TU109567 lncRNA downstream 52458 25885446 ~ 25885703 (+) True G87786
TU109615 lncRNA downstream 258188 26091176 ~ 26094196 (+) True G87824
TU109703 lncRNA downstream 732520 26565508 ~ 26569148 (+) False AMCG00021707
TU109760 lncRNA downstream 877229 26710217 ~ 26713476 (+) True G87939
AMCG00021694 mRNA upstream 70 25803425 ~ 25832384 (+) True AMCG00021694
AMCG00021692 mRNA upstream 79327 25752357 ~ 25753127 (+) True AMCG00021692
AMCG00021689 mRNA upstream 115868 25714584 ~ 25716586 (+) True AMCG00021689
AMCG00021687 mRNA upstream 154273 25632186 ~ 25678181 (+) True AMCG00021687
AMCG00021688 mRNA upstream 217189 25592537 ~ 25615265 (+) True AMCG00021688
AMCG00021693 mRNA downstream 10706 25843694 ~ 25867501 (+) False AMCG00021693
AMCG00021697 mRNA downstream 89214 25922202 ~ 25943386 (+) True AMCG00021697
AMCG00021704 mRNA downstream 287863 26120851 ~ 26121836 (+) True AMCG00021704
AMCG00021702 mRNA downstream 297494 26130482 ~ 26148080 (+) True AMCG00021702
AMCG00021703 mRNA downstream 319472 26152460 ~ 26161715 (+) True AMCG00021703
TU109403 other upstream 466477 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 1654464 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 4596374 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 4600966 21229852 ~ 21231488 (+) True AMCG00021561
TU109668 other downstream 319080 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 2945327 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 3227899 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 3545587 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 3545587 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile