RNA id: TU109543


Basic Information

Item Value
RNA id TU109543
length 225
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G87767
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25803340 ~ 25809204 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACTACCATGAGAGTGAACTCAAATCCTCTCTTCACCGACTTTCTATAAACTTGATTGGGAAGATTTGCAAATCCCACATATCCCTCCAGGTTTTTCTGTTGACCCATGGTGTTGACGTCCCGAGCCGCCTCAAACGATCTTGCACAGACCGACAGTCCCCTTCACGAACTCCCGGCGGCCCCCTCGATTCGGCAGTAGACGCACGCAACGTTCTTAGCGTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109528 lncRNA downstream 33444 25769396 ~ 25769896 (-) True G87756
TU109483 lncRNA downstream 122320 25678187 ~ 25681020 (-) True G87720
TU109482 lncRNA downstream 125923 25676983 ~ 25677417 (-) True G87719
TU109480 lncRNA downstream 145547 25657382 ~ 25657793 (-) True G87717
TU109470 lncRNA downstream 271581 25531473 ~ 25531759 (-) True G87707
TU109586 lncRNA upstream 76130 25885334 ~ 25885977 (-) True G87800
TU109590 lncRNA upstream 87754 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA upstream 87754 25896958 ~ 25898041 (-) True G87803
TU109592 lncRNA upstream 87754 25896958 ~ 25898041 (-) False G87803
TU109687 lncRNA upstream 585747 26394951 ~ 26395179 (-) True G87882
AMCG00021696 mRNA downstream 3676 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021690 mRNA downstream 89574 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021691 mRNA downstream 98512 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021686 mRNA downstream 391778 25406702 ~ 25411562 (-) True AMCG00021686
AMCG00021681 mRNA downstream 599439 25202404 ~ 25203901 (-) True AMCG00021681
AMCG00021695 mRNA upstream 64687 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021699 mRNA upstream 153710 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021698 mRNA upstream 216194 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021701 mRNA upstream 274574 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021700 mRNA upstream 282023 26091227 ~ 26105391 (-) False AMCG00021700
TU109433 other downstream 396802 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2464856 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2642363 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4719770 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 5078460 20721884 ~ 20724880 (-) True AMCG00021534
TU109596 other upstream 96240 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 282050 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 342901 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 1102270 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2972598 28781802 ~ 28783281 (-) True G88242

Expression Profile