RNA id: TU109567


Basic Information

Item Value
RNA id TU109567
length 258
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G87786
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25885446 ~ 25885703 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACAATTCACCTAAATGTAGGAAGGGCTGTGTAGTATACTGTTGCACTCTGTTGTGCGCATGATGAGCCCGTTATATTAACCATTATTTGTAAAGGTGAATCAGACTGCTACAATCCCTACTGAACTGTGGATTAAGTGAGAAATCATCTCAAACTATGAGCTCTGATGCACAGTCAGCTTTGTGGATCCGGATTAAACTGCTTCTGACATCCAGGtagaagaaatgaaaaacttTGACTCAACGTTTGTAAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109559 lncRNA upstream 15251 25858949 ~ 25870195 (+) True AMCG00021693
TU109541 lncRNA upstream 52458 25832454 ~ 25832988 (+) True G87765
TU109518 lncRNA upstream 132193 25753053 ~ 25753253 (+) False AMCG00021692
TU109467 lncRNA upstream 355861 25529324 ~ 25529585 (+) True G87704
TU109409 lncRNA upstream 513107 25366975 ~ 25372339 (+) True AMCG00021682
TU109615 lncRNA downstream 205473 26091176 ~ 26094196 (+) True G87824
TU109703 lncRNA downstream 679805 26565508 ~ 26569148 (+) False AMCG00021707
TU109760 lncRNA downstream 824514 26710217 ~ 26713476 (+) True G87939
TU109766 lncRNA downstream 835206 26720909 ~ 26737883 (+) True G87942
TU109790 lncRNA downstream 922554 26808257 ~ 26810867 (+) True G87961
AMCG00021693 mRNA upstream 17945 25843694 ~ 25867501 (+) False AMCG00021693
AMCG00021694 mRNA upstream 53062 25803425 ~ 25832384 (+) True AMCG00021694
AMCG00021692 mRNA upstream 132319 25752357 ~ 25753127 (+) True AMCG00021692
AMCG00021689 mRNA upstream 168860 25714584 ~ 25716586 (+) True AMCG00021689
AMCG00021687 mRNA upstream 207265 25632186 ~ 25678181 (+) True AMCG00021687
AMCG00021697 mRNA downstream 36499 25922202 ~ 25943386 (+) True AMCG00021697
AMCG00021704 mRNA downstream 235148 26120851 ~ 26121836 (+) True AMCG00021704
AMCG00021702 mRNA downstream 244779 26130482 ~ 26148080 (+) True AMCG00021702
AMCG00021703 mRNA downstream 266757 26152460 ~ 26161715 (+) True AMCG00021703
AMCG00021706 mRNA downstream 449947 26335650 ~ 26371009 (+) True AMCG00021706
TU109403 other upstream 519469 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 1707456 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 4649366 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 4653958 21229852 ~ 21231488 (+) True AMCG00021561
TU109668 other downstream 266365 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 2892612 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 3175184 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 3492872 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 3492872 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile