RNA id: TU109586


Basic Information

Item Value
RNA id TU109586
length 644
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G87800
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25885334 ~ 25885977 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aataaatcaaatcatgtGAAAACTCCACAATCACATGTTATTTGAGTGGAGAGATGAATGAGGCACATGCGGGTTTATAACCCCTGACCTGGAACCCCAAGGACATCACCCTTGCTAAATACACTTTGtgtataacatatataataacatGAGTATTGCATCTTTCATAATGATGAGGTGGACAATTTGATGCTCTCTCACAATTGGTGGGAGTGGGAGGGCTAAACCTATGCTTATGATGGTTAACAACATAATATACAACATTCCTTACAAATTTTCTTACAAACGTTGAGTCAaagtttttcatttcttctaCCTGGATGTCAGAAGCAGTTTAATCCGGATCCACAAAGCTGACTGTGCATCAGAGCTCATAGTTTGAGATGATTTCTCACTTAATCCACAGTTCAGTAGGGATTGTAGCAGTCTGATTCACCTTTACAAATAATGGTTAATATAACGGGCTCATCATGCGCACAACAGAGTGCAACAGTATACTACACAGCCCTTCCTACATTTAGGTGAATTGTAATGCATACACATTTCCATCAAGATTCTAGCATCATTCCACTGATAGTTTTCAGCTCCTCTCTTAACTTGCTATTTCTAGGGCCGTTGCCTTTTTATACAAGCACCTTTACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109543 lncRNA downstream 76130 25803340 ~ 25809204 (-) True G87767
TU109528 lncRNA downstream 115438 25769396 ~ 25769896 (-) True G87756
TU109483 lncRNA downstream 204314 25678187 ~ 25681020 (-) True G87720
TU109482 lncRNA downstream 207917 25676983 ~ 25677417 (-) True G87719
TU109480 lncRNA downstream 227541 25657382 ~ 25657793 (-) True G87717
TU109590 lncRNA upstream 10981 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA upstream 10981 25896958 ~ 25898041 (-) True G87803
TU109592 lncRNA upstream 10981 25896958 ~ 25898041 (-) False G87803
TU109687 lncRNA upstream 508974 26394951 ~ 26395179 (-) True G87882
TU109688 lncRNA upstream 532703 26418680 ~ 26418899 (-) True G87883
AMCG00021695 mRNA downstream 1102 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021696 mRNA downstream 85670 25719357 ~ 25799664 (-) True AMCG00021696
AMCG00021690 mRNA downstream 171568 25705576 ~ 25713766 (-) True AMCG00021690
AMCG00021691 mRNA downstream 180506 25682770 ~ 25704828 (-) True AMCG00021691
AMCG00021686 mRNA downstream 473772 25406702 ~ 25411562 (-) True AMCG00021686
AMCG00021699 mRNA upstream 76937 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021698 mRNA upstream 139421 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021701 mRNA upstream 197801 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021700 mRNA upstream 205250 26091227 ~ 26105391 (-) False AMCG00021700
AMCG00021710 mRNA upstream 554678 26440655 ~ 26472215 (-) True AMCG00021710
TU109433 other downstream 478796 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 2546850 23338251 ~ 23338484 (-) True G87263
TU108883 other downstream 2724357 23155187 ~ 23160977 (-) False AMCG00021619
TU108350 other downstream 4801764 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 5160454 20721884 ~ 20724880 (-) True AMCG00021534
TU109596 other upstream 19467 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 205277 26091254 ~ 26096784 (-) True AMCG00021700
TU109676 other upstream 266128 26152105 ~ 26154375 (-) True G87871
TU109843 other upstream 1025497 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2895825 28781802 ~ 28783281 (-) True G88242

Expression Profile