RNA id: TU109615


Basic Information

Item Value
RNA id TU109615
length 2977
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G87824
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26091176 ~ 26094196 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTACCAATGCAGAATTTTGGGTTTCTTTGGAAATAATGAGAATACACCATTGCTTGCAGTTCTCAAATGCCCGGTCTATTTAGAGACATGGCTTTATTAGGCAGACTTATATTAGCAGCTTATTCacattacacatacacacaaccaAAAATAATCCTGCAGAACTGAGGACCTCAGCCAGGCTATCCCACCAACTCATCACGAGCAAGCACCATTTGTTTGCTGGGCATGCATGTTTCAGATAGGATAACCTAAATTAGACTGAAATCAATTTTTGGCACCCTGGAATTTTCTCAAACTAACAGAAAACCACTATTTACAAGATTATTGTAGATTCCTTACAGAACCCCCTGCCCCATAACCCAATTTACTTGTTTCTTCATGCGAACTGTGAAACGTGGTATCAATATGGTAACTAATGTAATTTCCAACAGTTAGTACACTAATGGTTAAACAAATGGTTACAgaatgagagaaataaaataaacgataaaaaatatatgtatgtccCATTGATaggtataatattgtaaatcgATCATATTTCTACGTACAACTAATTCAATAAGCCATGTCTTTATTaccaatatacatatatattaaatacagctTTGCTTGAGTCTCGCCTCAGAGATCGTGAATATGAGTACAATTAGACCTTTTTCCAAAATAGATTAAACTTCTCAAGATAGGAAAGCATACAGAATGATCCATGCGGGTTTGTCACAAAAACCAAGCCTGCGCGTCACGCTTGCACCACGCAGGCGCTCGCAGTGCCGTCACTGCCTGTGTTGCAGCTGGAGGTCAGCACCGTCTACACTGCACACAGGGACGAGGACGGTAAATGCATATCCACTAGAAATGCtgccaaaatacaatacatctattcattattatacatttcctgAGTAACACAGAAATAGTACATTTGCACAAAcggattatttttttcagttgttggAACAATAGTCCTGAACGCTTTTTAGCCGTCCTCATCAGCATTTCCTGAcaatacagaacaaatacacaaacaaacaaacaaacaacgaCGACGCACATACTGGACAGTCTGACAGAACCAAAGCAGCGCTAACCATCCCACAAGGACTGCGAGGAAACAAGTGCCAATTTATTAAACACGGTTGTAGTTAAGCAGATAACAAAACCACTAATTGTAAAGAATATTATGGCGAAAACTAAAACACGAATAGCATGTTTTAATAACTCACTTTgatacaatattataaaaaaatcgATAATGTGCCTAGATACAAACTAATTGCTAAAGTATCCCGTTATACTTGGTAGTAGTCTAAATGGTAATATAGACGTGTACTGCTAATATAAATTATTGCAATGTTTTCTCCCTTaatgtaataaacacaaattatacattacataaaaagtCCCTActaaacaacatattttaagatCGTATGACGTTTTTATGACTATGGAAAATGCATGATGCAGTTGAACCATAACTAGATAGTAACATCCTTAAAAATGAACATGGGTGTCTTTTTAAGAATATTGAAACAGGAACACAAATCTACCCGTCTATAATTAGAGCATGTATGAAACtcactttaatatttaacacattgcatatctcataaaaataaaaaacctatatatatgaatgatagatctaagttaaatatttaaacaatcataaaacaaaataacagtatatgtatttatttattgcaaaatgacctgttaatgtactgtattaagaaatttaattatgctttcaatattttaacaaggtatttaaaaaacagtaaaaaaaaaaaaaaaaacatacagtgaacCTATTTCAATTgattgggaaaaataaaattaaggaCCTTTTCCTTTAGAACACCAAAACTTTTAGGTAAACAATGTAAACAGCATGAACAAAAATCATTTAAGAAAGAATTGTAATAGcctttgtatgtatatttggtCTTATCCCATCACAAATAAGCCCCCCAACAAGTTAAGgccaaacagtttttttttttattttaaatgtaaatatgttagCTAATTAATTCAATGCCCATAAAGGCGATCTTCATATTACCAACAAGCCAAGTTGAACACTGTACCCAAATGACTATTATCCAAAAAATAAGGTGTGCCACAAATCCACTTCTGTGTGAAGCCTTGAGGCTTTCAAAGTACACATTCTTTGAAAAGGCCTTATGTAAAACTATCCAAAAATACATCTATACTTGTAAATATCAAGAGGTTAAAGGCTTCTGAATTCAAAGAAGCtacataaatgaaaacatcagaATTTGAACATTCAAAGACAGAGCTTGCTTAAACAtacacctacatttttcaattcaatttcaatttcaattattgaaccccaattaaataaacacactaagTCTCCTAGCCTTATATCGGTATGCAGGCGTTCGGCCCTATTCTGGTGCAACACAGCAGGCTGATACTCGGCAGTGAAGATAGTCGGTTCTCTGGCACCAATATTACCAAAGGGATAGAGACTCTTTGCGTGGGCCCCGAGATGCTCTGGAGGAATCATTTTCCCCCCATCAAGACATTAAACTACCAGAGGAAAGACCTTTAGAAGAACTGCAGATCATTCCCCATACATCTAGAGTTAAGCTCACTGGCAGATGACAGACCCTTCCATTTCATCTCAGTTTGAGGATTTGAATCCCAGAGCATCAGACTCCACTTCTTATGCCCAAACCACTGCCACAGTTTAGCTTCATATCATTCACAGAGAAGAGAGGAAGTCCTGCAGGCCGCCcttcttgttcttttgtttttcttcaatgatCAATAACCTTTTGAGACGAGAAAATGCAAACTTCTTTGCACTGGCTGACttggaggaagaggagctggCAGGCTCAGCGGAAACCGACCTGTGAAGGGAAAGAAACCCTCCATGAGTTGTGTTTTCTAGGCGAGAGGCACATGTATGTTACACATGTGCAATGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109567 lncRNA upstream 205473 25885446 ~ 25885703 (+) True G87786
TU109559 lncRNA upstream 220981 25858949 ~ 25870195 (+) True AMCG00021693
TU109541 lncRNA upstream 258188 25832454 ~ 25832988 (+) True G87765
TU109518 lncRNA upstream 337923 25753053 ~ 25753253 (+) False AMCG00021692
TU109467 lncRNA upstream 561591 25529324 ~ 25529585 (+) True G87704
TU109703 lncRNA downstream 471312 26565508 ~ 26569148 (+) False AMCG00021707
TU109760 lncRNA downstream 616021 26710217 ~ 26713476 (+) True G87939
TU109766 lncRNA downstream 626713 26720909 ~ 26737883 (+) True G87942
TU109790 lncRNA downstream 714061 26808257 ~ 26810867 (+) True G87961
TU109792 lncRNA downstream 718834 26813030 ~ 26817282 (+) True G87962
AMCG00021697 mRNA upstream 147790 25922202 ~ 25943386 (+) True AMCG00021697
AMCG00021693 mRNA upstream 223675 25843694 ~ 25867501 (+) False AMCG00021693
AMCG00021694 mRNA upstream 258792 25803425 ~ 25832384 (+) True AMCG00021694
AMCG00021692 mRNA upstream 338049 25752357 ~ 25753127 (+) True AMCG00021692
AMCG00021689 mRNA upstream 374590 25714584 ~ 25716586 (+) True AMCG00021689
AMCG00021704 mRNA downstream 26655 26120851 ~ 26121836 (+) True AMCG00021704
AMCG00021702 mRNA downstream 36286 26130482 ~ 26148080 (+) True AMCG00021702
AMCG00021703 mRNA downstream 58264 26152460 ~ 26161715 (+) True AMCG00021703
AMCG00021706 mRNA downstream 241454 26335650 ~ 26371009 (+) True AMCG00021706
AMCG00021705 mRNA downstream 323110 26417306 ~ 26432305 (+) True AMCG00021705
TU109403 other upstream 725199 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 1913186 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 4855096 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 4859688 21229852 ~ 21231488 (+) True AMCG00021561
TU109668 other downstream 57872 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 2684119 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 2966691 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 3284379 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 3284379 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile