RNA id: TU109687


Basic Information

Item Value
RNA id TU109687
length 229
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G87882
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26394951 ~ 26395179 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgccttgaagcccaatttccatttgtgtccctgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109590 lncRNA downstream 496910 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA downstream 496910 25896958 ~ 25898041 (-) True G87803
TU109592 lncRNA downstream 496910 25896958 ~ 25898041 (-) False G87803
TU109586 lncRNA downstream 508974 25885334 ~ 25885977 (-) True G87800
TU109543 lncRNA downstream 585747 25803340 ~ 25809204 (-) True G87767
TU109688 lncRNA upstream 23501 26418680 ~ 26418899 (-) True G87883
TU109689 lncRNA upstream 36965 26432144 ~ 26437893 (-) True G87884
TU109775 lncRNA upstream 278899 26674078 ~ 26701116 (-) False AMCG00021719
TU109817 lncRNA upstream 402912 26798091 ~ 26800715 (-) True G87980
TU109835 lncRNA upstream 497297 26892476 ~ 26895336 (-) True G87992
AMCG00021700 mRNA downstream 289560 26091227 ~ 26105391 (-) False AMCG00021700
AMCG00021701 mRNA downstream 304965 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021698 mRNA downstream 338094 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021699 mRNA downstream 418615 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021695 mRNA downstream 510719 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021710 mRNA upstream 45476 26440655 ~ 26472215 (-) True AMCG00021710
AMCG00021709 mRNA upstream 169027 26564206 ~ 26566938 (-) True AMCG00021709
AMCG00021716 mRNA upstream 248575 26643754 ~ 26656084 (-) True AMCG00021716
AMCG00021719 mRNA upstream 305929 26701108 ~ 26718508 (-) True AMCG00021719
AMCG00021724 mRNA upstream 409861 26805040 ~ 26824298 (-) True AMCG00021724
TU109676 other downstream 240576 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 298167 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 486946 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 988413 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 3056467 23338251 ~ 23338484 (-) True G87263
TU109843 other upstream 516295 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2386623 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 2674022 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 3334898 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 3942404 30337583 ~ 30424612 (-) True G88527

Expression Profile