RNA id: TU109689


Basic Information

Item Value
RNA id TU109689
length 5750
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G87884
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26432144 ~ 26437893 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcgacaatttattaaaaattgatCTCATGCAGTATAAGGGTACAAGAAAATGATTGATAatttacagttgtttttttcttttctttatatatatatattccgaaCAATTCCAGTCtattatttaaagcatttaattttttagtgCACTAAACATCATTTGGAAAACACTGGTGGGGCACAGCCTCTTcataaatgtacattgtttgTTGCAGTATAAAAAAAAGAGGAACTAAAATCAATTTGTCATCTTTTCCGTGTGGGGTGCTCATGTCTGcagaaagtaaaaaagaaaacaacaaaaaagttctATATGGGTCGAGAACTACAGTATCATTTAAGACATATAATGTACTGCATGTTATAAACGTAATAAACTGCACACAGTCAGTATTCACAGACAggcaacagacacacactcacctcaCCTCCAAcactcctatatatatatatatataatagagagagagagagagagattttatttttttcatcctgCTATCTTAGAATAATATTTCTACAGAGAAATtagtgtatacattatatacagttaCAGTCCTCTTCCCCTTAAGGGATGAAATGGCCTTTATTTTGTCATGAACTGTCCAGTTGTGGTGTGTGTTAAGGAGGCAGCAAAAGGTGAATTGCACGCGGCAGACTCTTTAAgaattgcaaagaaaaagtCGGGGACcagtttctcatttttaaatggtgtcACCAACTACCCAATGTCTCAGAGTAAACTAgtatataagatatatataaatatccatACAAACAGGTTTCAGAGAAATGGACaacaatttgaatatattttaattgtgatgACCGTCAACATAGGATATTCCTCTTGATTAAGTGTACTAAAAGTATCCAATGCAATGGTTTATTGCCAGTTCAAAAGAGAATGGTTTTAGATTTTGTGATATGTTACACAACATGCTATTTTGGACAGATTGTCTTCTGAGAAGGTGTCCACGGGCTGACATACCACTGATTTTGTGTCTCTGATAGTGCGTCTTAGTACCCACAGTGCCTATCGTCtcaagaataaaatgaaaatgataggAAACCTACATgcttttacaaattatatatatatatatatatatatatatatatataatattcctACTTACTTATGTTTTTACTTAtaaatgcagatttgtttttctccaaaagctttttgttgtacttaacacaaacacatgagAATTTCTgtacttttgacttttttttttctctctagaGGAAAACCCAGATGTCAAATGCATTTAGTGAAAGATTTGGAAATCAGTGTGGAAAGTAACAATGACAATTCATACTATAAATCCGTGATTCTCAACCACAGCTTGAGTGGCTACAATCGGTTTTGGTTCAACTAGATGATTATGATTTTTAGTATTATTGGGATACACTGGAGGCCATAAAATATGTCAGTGTTGGTTTGGCTGTGGGTGTTATTCTGTGTGACTAACTCACAACCTGAGCTTAGAAACATAGATCTCAATGTTCCACAATTTCTTTCATGTTCAGAATTACAAATCTAGAGAAGGCATCGTTTTCAATGTACCTTGTGACTTTCTAGTCTGGCAAATGATCATTTTGAAcattgtcaaaacaaataattaattactttatgtAACTGATCAAGCAGTGTTGTCTTTTGAAAATCACTGTGCAAACAACTATTGGATGTCAGGAACACATGCTCTGCAAATCGTACTGTGAGTCTTGCAAAGTCCAAGTATTCTGCAGATTcaaaaaatatgattacaacccaatcatgttttttgtttttcttttttatgttttcacttTATTGAACCATGATGTGCAAATGAAATGCAGTCCATTACATTGTGACACAAGAATAAGCGCGCACACAGTGCTGGGATAGACCACTATaggttataaaaatgtatttgtgattttgtgtaatatttatattataccaCGTTTTACTGCTATTTCTACTGTACAATACAGAGATACAGATACTGTATATAAGAATGAGTTGCCAGTAGCAGCTAGAATATCTGAACCATGGTTTTGAGCTCAATTAAACACAGGATTTTATCAGTCAGgatatttcagtttcacaacATCAACAAGCGTTTTCTTCTCTccgcctatatatatatatatatatatatatatataatagagagagagagaaaaaaaatcaaattatattcatGTGTGAATGGCTTTTGATTTTCCACCATGCTTTCTGAAAAGAGAAAAGCggttttgtaaaaataaaggttAGAGTACTTATGAGCCCTTTAACTACCAaaactggtttatttatttatttagattataaCAAGTTATTTTCTCGtttcaaaaacacacagcatgtAATTAATCCCAACCTCCAAGGAAAGCCGgagcaacaaaataaaccatctcTGACCAAACCCCATCATTTACActtaacataacatttaaaaactgccTGTCATAGCTCTggaagttaaaatatatttaatagtattttttttttactttctgtaaTTTCTTCTATTTGGAAGATCAACTGATTTAATGTTACACAAATACTTATCAATTCAACAGAGTCTGAGAAATCTTGTTGAATGGGGCATTAACTGTCTTGTTTATGCCTGGTCACTGAACATGTATTGCCTGATTCTGCAGGAATATAAACCAAATGAAGGTAGTAAGTTTATCTTCCATTACTTTTTTAACATCCCGTTACTTAGTGTATATAACTCGAGTCCATAAAAGGAATAACATCTCTAAAAAATAGGCTACTTTTTGCACACATGCCAGATAttgaataaataacagaaaatcaGGAGTCACCAGCAATGCcttaaaacatgaattatgaCATTCCATCTTTAGATCTTTCCAAAACTGAAGTGTCAGTGCAGTCATGCCTTCatcacagccacagctcgcaggtttttgtctttctaaagatgaaaaaaaaaaaaaattgaattcaCATGCAGGAGCTAATGTTCTCGGCCTTCTACTGAGACTTTTTGCgttgtctgtttttgttcatatgaattgaaagataatgaaAGATTGTTTCGTTTTCTGGGATGATATTTTTCACTAAATTGTTTTTAGAATAGAAcgttcaaatataaaaaaataaatgatgtcttctttttcaaaaacagaataatttccCTATGCATACTTTAGCAAAGCTGCAGATCAACTGATTCTGAATAATAGTAGCATCTTATAGCTTTTTGTTACCAGTGTTTAaagtttttctttgtattttggaCTACATGGCTCAAAAACAGGCACTTGTTTCATGCACAAATGTCTGTCCTACTCGTATCCGATACTGGCCATATCAATAACAttagatttttaataaatatgttaacatttaagtacaaaaaggaaatatacaCTTGATATAACCCTAATTCACATCTTTATTTGGCTCATGTGTCAGCAATGAACCACCAGTGagttccaaaaaataaaaaactaacgAATTAAATTTTAATATATGATATTGCAGTTGTTGCAGTGCACAAACAATATTCCAATGCTATGGTCAGTCCTCGTCACCTGACCCAAATCTGTGGCCACTGACAGTGACACAACCGGCATCGCTTTCATCTCTCTGTAGCAAATGGTTcaaaaatgatatttttttttcccttgactGAAGAGGTTAAAGCTCATCTTAAACTGAACCCAAGACACCAATGGTGAGTAAAGATATGCTGAACAAGAGTCTCCATTGACATCTGTTGACCTAAATTTAGATCGTGATCTggaggtgtttttttattgtctttttccatttcgtttttctgaaaatgtttgtgtcaagaaaattacatttctccAGCATTGTCACCGTATTTAACATCACTGTTTAAGACATTTTTCAGAATGGAAAATCATTTCAGAGCAAATATGGGGTTAGTTATCGGACGCTTGACCTCTCCCTCTGTGTCAAAGGCCGCGTCATTTTATAACCAAGCCAGACACTCATGCGTATGACTTGCATGTGATCTGAAATCTAACATAGGAAGAGGTTGTTAACATCCCATTCATCTGTATTGATTATTGGTGCAATTTCAATCTTATTTCCTAGCATTTCTATTCACCTTCAAAGTGTTTCAAAAAGGGGAAATGTTCAGTGTTGGCATGTTCTGACAACTGTCCCccaccttgttttttttcccctccctttacttattattttgtttctcacatGCATTACATACTCAGCCTGTTTCTACGTTGTGAGAAACACGCTAGGCCACATTTGTCAGGCCACTTTAGGCAGTGTCTGGATTCAAAAACTATACAGGGACTGTACTTATACTGAGGTCTAGACAGTAATAACTTGTGGGGAAAGGTAAGTGATTATTTGATGAAATGTGCACCTTAGCCACACAACAACATTTGGGGTTGTTACTAAAAGATTCAAACCACTTGGAGACCGGCTGAGTTCCACACCCGCTATTTCAGAAGACTGTCTTCAGTCTTACTTCAGCCAGAGTCACTCCGAGTGAACCTCTGGTTGGCAGGAATGTATTCAGAAGTGGTAtacgtgtgcatgtgtgtgctttttatatCTTTCTGCATatgcacgcatgcacacacacacacaaactcacactgtGCTCCTTATTGACTTCAATGTCTCTTTAGTAAACTTCAAAAAGCATATGATTTTTCTTATGGATTTGCAGAAGAAAGGATACACGTTTGCTGCCCTTTCCGAAAGAGCTGAATTGACAGAATAAATGCTAAATCCATTTCTTTGCTCCCCACTGAGAGAAATCTACACCAAACAAAACTGTTATAAGGTAGGAGCTTCATTTACTCCCTGAGGTTCCTAtgacaggatttatttttagagGGAAAATGGTGGAAGTTTAGGAATACAAATTGTGCCCTGTTCTAGTATTTGAACTGTAATAACTGTGAATGTAAAAATACTGATTATTTACAGTTACTATCAATTCACAACCATTACATGTCATAAGCCAATGCTTTTGTACacccaaaatgaaaatgatttagGTATATGCCGCAAATCAATTGCATCTCTTGGATATTTGTGGATTTTCAATGGGGAATTGGCTGTTCCCAACACGTTGCTTTTTAGAATACCCAAAGCATACTTTGAAGTCAAAAGGTATGCTATTTACACGTCCATTGTTACTTCTATGAAACGTATGTCAGGTTTGGAATTCTCCCTCTTTTCTGCATCCTCAAGACCCAGGCATTTAGTAAAATACTCAAGTTTGACAAGTTCACATATGGTCAAGTAtatgacaaagaaaacaaacatttaaaaaaacaaaaaaacaaaataaaacctttaagcAGATAAGGCTACAGGTCAGGTTGGGTCATCTGTTGCCCACCTCTGCAGTTTGTCAGGTGACTGTGGGTCAGGACCCCCTGTGGCTGCTGGCCTGGATGTCAGTCCCTCTGTGATTGCAGTGTGTGTCGAGTTGAGAGTACTGGGTCGTGTACAGAGTCCCTTTCTGCTGACTACAATATCAGTCCAATAACAACAGGTAGTGtcttccccttctctccttccccccactgcccaCTGATGTGGCTCACAGACCAGAGACCATGACCCGGTAGGACGGGGGCACATGTCTGTGCCGCGGACTGGCACTGGGGCTGACAGACGGGCTGGCACAGCTGGCATCTACCCCCCCTATGGAGGGCAGGTAGGCATGGTGCAAAATTGGCAGTTGCAACGACAGTCTACGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109688 lncRNA downstream 13245 26418680 ~ 26418899 (-) True G87883
TU109687 lncRNA downstream 36965 26394951 ~ 26395179 (-) True G87882
TU109590 lncRNA downstream 534103 25896958 ~ 25898041 (-) False G87803
TU109591 lncRNA downstream 534103 25896958 ~ 25898041 (-) True G87803
TU109592 lncRNA downstream 534103 25896958 ~ 25898041 (-) False G87803
TU109775 lncRNA upstream 236185 26674078 ~ 26701116 (-) False AMCG00021719
TU109817 lncRNA upstream 360198 26798091 ~ 26800715 (-) True G87980
TU109835 lncRNA upstream 454583 26892476 ~ 26895336 (-) True G87992
TU109836 lncRNA upstream 454583 26892476 ~ 26895336 (-) False G87992
TU109958 lncRNA upstream 971530 27409423 ~ 27409711 (-) True G88095
AMCG00021700 mRNA downstream 326753 26091227 ~ 26105391 (-) False AMCG00021700
AMCG00021701 mRNA downstream 342158 26083778 ~ 26089986 (-) True AMCG00021701
AMCG00021698 mRNA downstream 375287 26025398 ~ 26056857 (-) True AMCG00021698
AMCG00021699 mRNA downstream 455808 25962914 ~ 25976336 (-) True AMCG00021699
AMCG00021695 mRNA downstream 547912 25873891 ~ 25884232 (-) True AMCG00021695
AMCG00021710 mRNA upstream 2762 26440655 ~ 26472215 (-) True AMCG00021710
AMCG00021709 mRNA upstream 126313 26564206 ~ 26566938 (-) True AMCG00021709
AMCG00021716 mRNA upstream 205861 26643754 ~ 26656084 (-) True AMCG00021716
AMCG00021719 mRNA upstream 263215 26701108 ~ 26718508 (-) True AMCG00021719
AMCG00021724 mRNA upstream 367147 26805040 ~ 26824298 (-) True AMCG00021724
TU109676 other downstream 277769 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 335360 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 524139 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 1025606 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 3093660 23338251 ~ 23338484 (-) True G87263
TU109843 other upstream 473581 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 2343909 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 2631308 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 3292184 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 3899690 30337583 ~ 30424612 (-) True G88527

Expression Profile