RNA id: TU109760


Basic Information

Item Value
RNA id TU109760
length 2251
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G87939
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26710217 ~ 26713476 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTCAGCCCAATATCGTGGAATGTCAGGATGACCGGCCGGTTTCCTTTGGGGACCCCTCGCATGGTGACATGGATGGGACCATATGGTGTTTCGATATCATGTTAGCGATATCAATCTCAAAGACAGAGTCTTCCTCCTCAAGCACCATGTTTGCTGCAGTTAGTGCAGGGTGGGACAGAATCAAATCGCTTTAAACTTTAAACCTGCTTAGCTACTTAGCTTCAACGCTGCTGAAATCTCAGTTTTATACTCCTGTGGTTTACTATTCTGCATAAGCTTTCCACTCCCATGGTGCTTTGCACAAGCAACAAAACAAGCTAATTCTGGATGAAGAGATCTTTAAATTGGATCAGTCAAAGTCAGGAGGTTTGACCATCTAAAGCATGCCGGTTGTCTTCAGTTCATGgacaccaaaaaaataaaaataaactcataaTAGACTGGCATAAGATCGATTTTAAGATCGAATATGACAGGGATAGCAACTTTGTCTTTTTGCATTTCCTCAAGAGTTCTGAACAGTTCATGTTGGTCATATAATCATTTACAGCTCAACATTCACATGAATACACTTCATAGCCCATTATTATAAAGCACTACAGCATTTAGAATATTCACCATCACTAATGTTAATTGCATATAGTAACGAACATCTCAGTTTTACCATACCATTCAGTTCTGtaattttttgtttctctttcaaaCAGAATAAGGTTCCATAAATTGGAACACATACAAattgaaaagttaaaaaaaaaaaaaaaaaaaaaaaaacttgtgatTTGGTGTATTTGGTGATTTCCACTTAAGTAAATGTGATAGTCATGATGAGCCATGCTTATGGAGAGgacaaaaatgattaaattgtaatgggatgttataaataaatgtcagattAATACAAAAGCTACAACACCACCAAGAACACGTTATTGTGATGATGCAAGGATAGGAACGTACAGGAAACCCAACTGTGCTTCGTCTGCCTCAGTTCCTTCTTGATGCAAGTGATCAGCAGCTTTACAGCGGCACTAATCCCATTTAACTAGAGATGTTGACTACGTGAGGTTAGTGTCTATAGTGCAAAGCAGCTAGAACAGATGGTATTTCTCCTGCGACAACGTCAAAGCTCTTAGAGGTGCAGACAGTCGTCAATATTAAACACTGTCCTGGAAAACCGAAGACGGTAATCTGTTTGGGAGGATCAGCACGGGACTGCCATCTGTTTACAGATacttgtatacatatatacacaccgaaACACATTCTAGGCCAGCACTGTTTCTACAATCCCTACAGTCTCCACCTCAGTTGgactatttttaaagcattcccTAAAGCATTTCCTAAAATGGATGACACCATCTATATTGGAGAGGCTTAactggttatattttaattactgatACCCCCTCTGTATGCGGTGCATGCAGTATCCAAAGCTTTTTCTAAAACACAGTCACAGTAGTACCTTACTGTAATGTAGGCCTTCCACACTAAAATTAGTTTTCCCCATGAAAGTTGAAGCACTTTAGAATGATCAGTTCTTGAGCAGCAATGATTATAAAACTCATTTTAACTACTTTGTGTGCACTCTGTGAAACTGAGTGACGGGGTCTCCGAGTGATGAGATCACTGTATCTGGGAGTTGTGGGAGGAGGGATCATTTGAAGATTTTTCCACTGGGGACTAATAAGAATCAACCAGGCACAGAGAACAGTGTGTGGGTTTACTGACCAAAGCCGGCAAGCGTTGTGGAATTCCTTGACGCTTTTATATACTAAAAGGTAAGGGAGGTGGCAATATAGCACCTGAAAGCAAAATACAGAAGGGACTTTAGTTATCTGTTAAAAGCtggaattaatttgaaaaataatttggtaGTAAATTCAGATACGATAGCTGAAAAATACAGAGCAATACTGTGAGggtgttttttcattgtttttgttgtttagtttcATACTCTACCATtgatgtatattaaaaatggaGCTGCACAAACCCATTACAAGACaggttttaaaagcaaatgtatttcatcACATTTCTTGATCTTGATAATGATCCAGAAATTAACTTTTGCAGGCATGAACCCTTTCACGTTATGCTTATAATGTTATTTGTCCCTGACTTTCTACACAGCCATTGTTGGTATTGCTAAATCTGCGGTTACTGCATCTCTGTAGCAATGAAACAACAATTTATAAAGACtgattaacaaaaacaatgagtGCTTAGGGCAAATT

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04727 GABAergic synapse
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109703 lncRNA upstream 141069 26565508 ~ 26569148 (+) False AMCG00021707
TU109615 lncRNA upstream 616021 26091176 ~ 26094196 (+) True G87824
TU109567 lncRNA upstream 824514 25885446 ~ 25885703 (+) True G87786
TU109559 lncRNA upstream 840022 25858949 ~ 25870195 (+) True AMCG00021693
TU109541 lncRNA upstream 877229 25832454 ~ 25832988 (+) True G87765
TU109766 lncRNA downstream 7433 26720909 ~ 26737883 (+) True G87942
TU109790 lncRNA downstream 94781 26808257 ~ 26810867 (+) True G87961
TU109792 lncRNA downstream 99554 26813030 ~ 26817282 (+) True G87962
TU109837 lncRNA downstream 183249 26896725 ~ 26906365 (+) True G87993
TU109874 lncRNA downstream 343898 27057374 ~ 27057611 (+) True G88024
AMCG00021717 mRNA upstream 9976 26687100 ~ 26700241 (+) True AMCG00021717
AMCG00021711 mRNA upstream 30132 26661019 ~ 26680085 (+) True AMCG00021711
AMCG00021715 mRNA upstream 66896 26640291 ~ 26643321 (+) True AMCG00021715
AMCG00021713 mRNA upstream 70112 26597621 ~ 26640105 (+) True AMCG00021713
AMCG00021712 mRNA upstream 113867 26579325 ~ 26596350 (+) True AMCG00021712
AMCG00021718 mRNA downstream 36955 26750431 ~ 26751588 (+) True AMCG00021718
AMCG00021720 mRNA downstream 70643 26784119 ~ 26802985 (+) True AMCG00021720
AMCG00021721 mRNA downstream 123364 26836840 ~ 26844877 (+) True AMCG00021721
AMCG00021722 mRNA downstream 136402 26849878 ~ 26865877 (+) True AMCG00021722
AMCG00021726 mRNA downstream 240681 26954157 ~ 26978899 (+) True AMCG00021726
TU109668 other upstream 513141 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 1344240 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 2532227 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 5474137 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 5478729 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 2064839 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 2347411 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 2665099 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 2665099 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 3553926 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile