RNA id: TU109790


Basic Information

Item Value
RNA id TU109790
length 2009
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G87961
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26808257 ~ 26810867 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAATCTAAGAAGACTGAAGCATTAGGATAGTCCTGGTCACGTACCCGCCATCATACTGGAGGAGCTGACCGGGGTGTTTCCAGCAGACATCGCGGACGATGAGCCCATCCTCACCTGGTCTTTCACAATAGGATCTGTCAAACAAGCAAGGTACAGAGGAACACGTTTTTCTCTTATTTCTAATCAAGCTATTTTATACAATACCATTCAGATGTGTGGGGATGCTTTTCAAAACGAAGTCCCTCACCCAACCCCCAATGTTCAAAATATTCCAAAACGATCAATTTATTCAGCTCTTAATAACTATCTGCAGTACACCCCTCAATTCAAGGTAACCACAAGACACTAGCACAGACTATGTGCCGGCTCCAAAATGTTCTATAGCGCCTTTAATCCCAAAAACTGTAGTTATGCCTTGGCCgaaacagcacagaaacaagCACAGGCGTTCAGCACTGGCCAGCACGAGCCACTCAGCCAAAGACACCTGCAGCAGGGAGGGGAATGCTGGGAATTCATATTAAGATAGTATCCAGGAGAGTAATTAAAATGGCACATTTCATTAACCTGTACTACTTAAGCCAATAACACTTGCTAGTCATTATTAAAATTGTTCCTTTTTAATGAAGTAATGACAGGACCTCAAGTTAACAGGAAGACGCACAATACTGCAGCACAATGTGATGCATCACTGCAAAGGgtgtttgaattaaaatgactttACTTTGACTGATCCAGAACATTTTGGTTCTAAATTCATGGAAGAATGACACTTACTGGTCCCTGGTGAGCCATCTCCCTACACTGACAACAGGGTGAGAAAGAAGAGTAGACTGAAGGGTACATCAGAAAGTATTTTCTATTGAAgaaaactgatctgaaatcaGGACTATTCACAACTGAATATTCTCCAGTAATtatgaatttagtttttctgtttgttacgATCTACATTCAcaaccttaaaaaaaattatgtaaatgaaaaagagCCCctaaaagaaactgaaatgtacTGTAGAAACCCATAATCAGAGTTAACTATGCACACATTCAGAACCTTCACTGAAAGTCAtggttttgttcatttgtaatTGAGTGGAATGAAACCTTGAGAACTGAAActaacaactgaaaaacaagtcAGGCTGGTATTAAGCCTTAAATCATGCTTCAGTCACAAGCACTCTGCACAATTGACACTCCTTGATTGGTATTGCCCATAAAGGTATATTTAGCATACTCGGATTTTGGATATCGAACAGCCAAGATATGTTCTATGCCCATGGTTTAAGTTCATATCAATACATTAGGGACATCTCATTGTGGGTACTGTGattaaatgggggggggggaaatgaaaaCAGTTCTGCTGAATGGAACAATCAGCTTTCCAGTCTGGTAGACAAATAAGCATCATATACCCATATCAAGTAGCCAAGAAACTTTTATATGGCATAATACCTGGCAGTTACCTgaagaaatgtatacaaaaataatgtaaatgtttattttggataAGAGTAATCAgaattaatatgaatttaacCACATTGGTACCTGGTTCAATTGCATACTTGGTAACAATTTCCATGGTCATCTCTGATAATCAGTAACACAGAGCCTGGTTTATCAGCAATCAATTAGATTTCAACTTCCTTTTTCTGGTGGATTCTCGTGGGACATACCGGCCCAGAATGTGAGCGGACAGACAGTTAAGTGTAAGAGAATTGTATCTGCAGGACAGCTGGTAACTTACAGAAGTAGGGATGCTCCATGGCCTCTCTGGCTGTCAGGCGGGCTTGATGATCATAGCGAAGCAGTTTGTCAAGGAAGTCCAGGGCTTCAGTGCTCACAAGGTGCTGATTTTCACTATGTACAAATCGCTCCCACCTTTTACGGGAATGTCTGCCAAAATATCATTAAACCGAGGGTCTAATTCAATGTTGTATTTGTCGATGTAGTCATACAAATCTTCTGTGCCCAGTACTTTAGCGATTCGTACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109766 lncRNA upstream 70374 26720909 ~ 26737883 (+) True G87942
TU109760 lncRNA upstream 94781 26710217 ~ 26713476 (+) True G87939
TU109703 lncRNA upstream 239109 26565508 ~ 26569148 (+) False AMCG00021707
TU109615 lncRNA upstream 714061 26091176 ~ 26094196 (+) True G87824
TU109567 lncRNA upstream 922554 25885446 ~ 25885703 (+) True G87786
TU109792 lncRNA downstream 2163 26813030 ~ 26817282 (+) True G87962
TU109837 lncRNA downstream 85858 26896725 ~ 26906365 (+) True G87993
TU109874 lncRNA downstream 246507 27057374 ~ 27057611 (+) True G88024
TU109875 lncRNA downstream 249315 27060182 ~ 27060389 (+) True G88025
TU109876 lncRNA downstream 250952 27061819 ~ 27062090 (+) True G88026
AMCG00021720 mRNA upstream 5272 26784119 ~ 26802985 (+) True AMCG00021720
AMCG00021718 mRNA upstream 56669 26750431 ~ 26751588 (+) True AMCG00021718
AMCG00021717 mRNA upstream 108016 26687100 ~ 26700241 (+) True AMCG00021717
AMCG00021711 mRNA upstream 128172 26661019 ~ 26680085 (+) True AMCG00021711
AMCG00021715 mRNA upstream 164936 26640291 ~ 26643321 (+) True AMCG00021715
AMCG00021721 mRNA downstream 25973 26836840 ~ 26844877 (+) True AMCG00021721
AMCG00021722 mRNA downstream 39011 26849878 ~ 26865877 (+) True AMCG00021722
AMCG00021726 mRNA downstream 143290 26954157 ~ 26978899 (+) True AMCG00021726
AMCG00021729 mRNA downstream 190250 27001117 ~ 27002570 (+) True AMCG00021729
AMCG00021730 mRNA downstream 200002 27010869 ~ 27011910 (+) True AMCG00021730
TU109668 other upstream 611181 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 1442280 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 2630267 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 5572177 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 5576769 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 1967448 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 2250020 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 2567708 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 2567708 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 3456535 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile