RNA id: TU109792


Basic Information

Item Value
RNA id TU109792
length 2111
lncRNA type inter_gene
GC content 0.38
exon number 6
gene id G87962
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26813030 ~ 26817282 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTAGTCTACCAGCAGCTCCGGTCCCTTGAAGTATCTGGAGGCGACTCGAACATTGTATTCCTGTCCAGGATGGTAAAATTCTGCCAAGCCCCAGTCTATCAGACGAAGCTGTAACCATCAATTGACCTTTCTGTGTTCATGGTCAATCATTACATTGTGTGGTTTGACATCTCTGTGCATGATTCCCATACTGTGACAGTAATCCAGAGCCTGAAGGTACAAGAGGAAAATAGGACAGTTTAAAAATGGTCACATGGTCTGCCAGAAGCTGGTCATTCAGCAAATATTACAAGTGTTCCATTAGCTACAAACTTATCTGGcttcatagaaaaatataaaaatcataagAATCACATTCATGCGGAAAGGAATTTAACACCCAAGAAACATTCACATCTAAGTGGTTCTCTTACGTATTTGGAATTCTGAATGAGAGGTTTTCTGTtaactgcattttcaaaagcacTTCTGTCTTACTGTTTTTGAGAGGTATGAACCctaagcaaaacaaatgcacagtaaaGCATTGCAACAATTTATTTATAGCATGCATTTGTGCTGCCACAATCACAGAGTCCAAATGTACATAGCCCAGGTCACAAACGGATTATGTAAAGCTTTAATCGAATACAAACAGTGCAGAGGTaccaatgcaaaaaatatcctATAAATTggatttccaattaaaatatttttgctaAGCAAGTGGCTTTTTCATGCAGGCataccattttatttatgttatagtATAACTATTTCTAGGATGCATGCTTGGTAAACTGTGTTAAAACTCTTCCATTAAGAACAATATTATCTGTCTTGAGCCATGCTGTACCAAAGCTACCTGGTGGCATGTAGATTTTTTCAACATTGCTACAAATGCTGATATCACTATTGTGGTTTGCCTTTGTAGTTTTATGCCAGGAGATGaatcattatataaaaaaaaaagaaaactaccaAAATGGCAATGGTCACACTGCTATGGGCACAAAGGACTACTTTATAGCTTTATGACTTTCAAACTTCCTGGTTAACCCTTGGCCATTTAAAGTCTATGATTGCAATGGCCTCATATAGAAGGTGTTAAAGCAGCACACTTAAATTGGGTTTGTTGgggaagattttattttttatctagTAATTTGCATTAGTCTTTTTGAACAGttctttcagaaaataaaatctgttcatGCATTTCAGTAATGGTCCTTGGGCTTAAATACGCAAATTACCTTAATCTTGAAGATGCCAAGTATGCTCGAGAATTCCAAATAGTCAAAGcactatacattatttatagcAATGAGGGTAGGTGATATAACTGCTGATAACACAAGTGAACTCCCAGTTTATTTCTTGAGAACCATCTGAACTTTACTGGTCTACATCAATGTCCACTCCTGTAAGGCAATCTTAATCCATTCTGAAGAAGGGTACAGACAGTGCAAGCAGCTGGGGTGGTCTTCAAGACTAATACACAGTGATAGAGTTAAAGCAATATTTAAGTTGATAGAGGGAAATACTATTTCAGTCTGCATTAATACACATCAGAAGATTAAGGAAGCCTTACCTTTAGAATTTCATACATGTAGAACCGGATGTCGTAGTCTGATAATGTTTGATACAAttgCTTGAAGTCTGTGTTGTTTACATGTTCGAAAACCAGTGCTGGCGTCCGGGACACAGGATCTTTGACAATGTCTAAAAGTGTGATTATGTTGGGGCCACCTCTGAGGTTCTCTAGAATCTTAATTTCTCGcttgattttcttcttttttacaggCTTCAGAATTTTGACGACtactttttcattgtttgtgaTGTTTATGGCTTCAAACACTTCACTGTATTTGCCCCTGCCAAGTTTCCGCACCAGTTGATAATCATCTTGATTCCCCATTCAACAACATGTGATTCATAATCCCAGTACTCCCGgggtctctgtgtgtttacGTCAGGGTAAACTCGGGCTCGACTTGGAACTGGTCCAGACATATTCTGAAAACAGAGGTGAAGGTGATACTTTGTTGATcacctaaaaaaacaacaacaaaaaaaaaaaaatttaattcATCATCTGCCCTACCACATCATGGACAGTATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109790 lncRNA upstream 2163 26808257 ~ 26810867 (+) True G87961
TU109766 lncRNA upstream 75147 26720909 ~ 26737883 (+) True G87942
TU109760 lncRNA upstream 99554 26710217 ~ 26713476 (+) True G87939
TU109703 lncRNA upstream 243882 26565508 ~ 26569148 (+) False AMCG00021707
TU109615 lncRNA upstream 718834 26091176 ~ 26094196 (+) True G87824
TU109837 lncRNA downstream 79443 26896725 ~ 26906365 (+) True G87993
TU109874 lncRNA downstream 240092 27057374 ~ 27057611 (+) True G88024
TU109875 lncRNA downstream 242900 27060182 ~ 27060389 (+) True G88025
TU109876 lncRNA downstream 244537 27061819 ~ 27062090 (+) True G88026
TU109877 lncRNA downstream 246281 27063563 ~ 27063951 (+) True G88027
AMCG00021720 mRNA upstream 10045 26784119 ~ 26802985 (+) True AMCG00021720
AMCG00021718 mRNA upstream 61442 26750431 ~ 26751588 (+) True AMCG00021718
AMCG00021717 mRNA upstream 112789 26687100 ~ 26700241 (+) True AMCG00021717
AMCG00021711 mRNA upstream 132945 26661019 ~ 26680085 (+) True AMCG00021711
AMCG00021715 mRNA upstream 169709 26640291 ~ 26643321 (+) True AMCG00021715
AMCG00021721 mRNA downstream 19558 26836840 ~ 26844877 (+) True AMCG00021721
AMCG00021722 mRNA downstream 32596 26849878 ~ 26865877 (+) True AMCG00021722
AMCG00021726 mRNA downstream 136875 26954157 ~ 26978899 (+) True AMCG00021726
AMCG00021729 mRNA downstream 183835 27001117 ~ 27002570 (+) True AMCG00021729
AMCG00021730 mRNA downstream 193587 27010869 ~ 27011910 (+) True AMCG00021730
TU109668 other upstream 615954 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 1447053 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 2635040 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 5576950 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 5581542 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 1961033 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 2243605 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 2561293 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 2561293 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 3450120 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile