RNA id: TU109817


Basic Information

Item Value
RNA id TU109817
length 2386
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G87980
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26798091 ~ 26800715 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAACAATCTGAAGTGGGTTACTTCCAAGGCAGAAAAGGCTACTGTATCCCAGAGATACTCATCTTCCACTCAGTACCTGGCTGTAGTTCATAGTTTTCCATACAGACATCGACAACAAGGTCTTGAACATGATTTCAGAGCAGCTGGTTTGCGAACACTCTGAGGAGAGCATGGTTCATAAGCCACGTTACTGACTCAGAGCTGAAAAGATCCCCCCCCAACTCTCATGCAAGCCGGGGCTTGGTTTcgtttttctcttctctcatCGTCTCATGACACCACCCCTATCCCCACTGGGGCCGTCAGCTCTGGGTGAGGTATTGTAATGtcttttgtagttttgtatgaaacaatgtaaaaaataacttctattaaaaatacacaagtcTTCCAAATgctcccccccccgccccatcACCTCTCATCACTCCCGTCTCTCTGGAGTGTGAAAAAGTCATCTGAGTGGTGTTACAGTTAAAAGGGACATGCACtaggaaatgtatataaaattacatagaaaaacaaacgGGACAAAAGCAGTTGTTAAGCATCATGATGGCAAATTAACACAGAGGTCAAAGTGTACGCGTTCCGAGGCGGCGGTGGCAGGTAAAACACAGACGTGATGGTCCGTGGATGTCCACACTGGCTAGGCTTAGAAGGAATCTGCTTAACGAGGGGCTATGGCAGCATCTGTGGCATTGATTGTCTTTTCAAATGTGCAACTCAGAAAGTCCACAAGAGGGGCGGCAGTTGCAGCGCCTGTCGACAGTGCTGTTGAGATCGGAGAGTGTGCTTGTGGCACTCAAGTACATCTATTAATGCTTAGGAAACGCAGTGgggcttgtttttgtgttttgttgcgGGAACGTCATCGTCCTTACGCTAAGGGATTAGCCAGCACTTGGAATTAACAGGTACAAACGAAGACTAAATACAAGAGGCTCGTCTCTAACAGCCCTGAGCTCAAGATAAGTCAAAAAGAGGGTCTCCTGTTTAGCCTATTGCCCTTGGAGGTGAGCTGTTCACTTCAAACTGAAAGGGGTGGAGAGTCCAAGTGCATTGGTTGCGATCAGTCAGTTTCCCATTAACCGTTTGGATCCGTCAGGGAGGTGTCCAGGGTCACATGATGCAGCACTTATTCTTGTGGTTGTGGGGGTCTTTGAATCGCAGTCTTTGTTTGGGGCGATATTTCTCCAGGTAAGTCAGCTGCTTGCTGTTGATGGCCCCCCTGCGTTTCTGTCTGATGAACTGAATAGCATCCTCATACTTCATCCCACTCTCAATCAGGGCCAACGCCACCAACACGGGAGCCCTGAAATGGAAGGAAATGATTATACTGGATGTCCTCATGCGTTTCTCTATTTTATTCAGACCAACAAAAAGGGTAAGTGTGGATGTGTAGTAAAGCTCTGCTATGTATCAGTAACACAGCACCACCTAgtgctcattattattattttataaacatggCCAGGTACAGAAATTGTACATTTGTACTATGGGGGCGATATTGCTGCAAGTTGTTTCAGTAATGTCTACCTACAACACAAGATATGGCAGCGTTTAATTAAATGACTAGGAACCGTCAACAGCAAAGCGTAATTCCTGGTTATACTCAAATAGAACTTTAGTTGCACGGAATTCCAAAAAGAATAATTGCACAATGCACATCAGAACAGCTGCAAAAGCAGTTCAAGACGTATCAGCATGTCTTCTTCACTGAGAGCTTGTTACCAGACCAAGCCCGTTTTAGTATTCTGCATAACACAGTAAGTGGCCCTCCCGTGAGGTCGCGgtgttcaaaatgaaaatgttctaaTTAATAAGACTGCCCAGAAAATGAGTCATGTGGGATCCTGACTCTGAAGGTCGGTGAACCGCTGCCTCGTTATGTCTTGGTGTTCTTAATGAATGAGTCACCACAGCAACAGCGGGAGAtgatcatttcagttttgtatcaGAACAGTCTAATACACGATTCTATTAGGTCATCAGTTGGCATCCTTAATGCGTCAGCCCTCACCAACCCGTCTTCAATGACCACCTCTGCTTTTTGTTGGTAGCATTCTGTTTACTTAAGCAATGGGAAGAAAGAGACCAACCCAGACCAAAGCTGCTCCGGTCAGGTGAGAGCCTGGTTTAAAACCTTCTGGGTACATCCTGCTCCTTAATAAGGAATGGGAAAAGGGATGTTTTGTTACAGACTTTGAGCTGTTTGGTTTTTTGaggaaaagaaaccaaacaaaacaaaacaagactcGGAACACCATAAACAAAATGAGTTAAAAAGGCAACGTCAAAATAAATTGACATGTAGCCTAACTGGTCTCAAATATGCTTTTTTCGGCTACAGTAACCGGGCACTATTTGAagggaggtttt

Function

GO:

id name namespace
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109775 lncRNA downstream 96975 26674078 ~ 26701116 (-) False AMCG00021719
TU109689 lncRNA downstream 360198 26432144 ~ 26437893 (-) True G87884
TU109688 lncRNA downstream 379192 26418680 ~ 26418899 (-) True G87883
TU109687 lncRNA downstream 402912 26394951 ~ 26395179 (-) True G87882
TU109591 lncRNA downstream 900050 25896958 ~ 25898041 (-) True G87803
TU109835 lncRNA upstream 91761 26892476 ~ 26895336 (-) True G87992
TU109836 lncRNA upstream 91761 26892476 ~ 26895336 (-) False G87992
TU109958 lncRNA upstream 608708 27409423 ~ 27409711 (-) True G88095
TU110025 lncRNA upstream 819105 27619820 ~ 27620091 (-) True G88153
TU110026 lncRNA upstream 826405 27627120 ~ 27631668 (-) True G88154
AMCG00021719 mRNA downstream 79583 26701108 ~ 26718508 (-) True AMCG00021719
AMCG00021716 mRNA downstream 142007 26643754 ~ 26656084 (-) True AMCG00021716
AMCG00021709 mRNA downstream 231153 26564206 ~ 26566938 (-) True AMCG00021709
AMCG00021710 mRNA downstream 325876 26440655 ~ 26472215 (-) True AMCG00021710
AMCG00021700 mRNA downstream 692700 26091227 ~ 26105391 (-) False AMCG00021700
AMCG00021724 mRNA upstream 4325 26805040 ~ 26824298 (-) True AMCG00021724
AMCG00021723 mRNA upstream 99248 26899963 ~ 26919820 (-) True AMCG00021723
AMCG00021725 mRNA upstream 145457 26946172 ~ 26946690 (-) True AMCG00021725
AMCG00021731 mRNA upstream 203766 27004481 ~ 27009904 (-) True AMCG00021731
AMCG00021732 mRNA upstream 253328 27054043 ~ 27064071 (-) True AMCG00021732
TU109676 other downstream 643716 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 701307 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 890086 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 1391553 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 3459607 23338251 ~ 23338484 (-) True G87263
TU109843 other upstream 110759 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 1981087 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 2268486 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 2929362 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 3536868 30337583 ~ 30424612 (-) True G88527

Expression Profile