RNA id: TU109835


Basic Information

Item Value
RNA id TU109835
length 680
lncRNA type inter_gene
GC content 0.43
exon number 8
gene id G87992
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26892476 ~ 26895336 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagatcTAGGAGTTCAGTCACCTACGAGTTCACAAACAGTTCAGTCTGTAGATCATACAGAAGGTGGTGTTGATCCAGGCAGTACTGACTCTGCAGATTCCAACGGAAATGGTGGTCGCCAGAGTCCTGTATCACAGACAGTTTCCCCAGGGGATCAGACTGGCACCATCTCCCACACAAATTTGCCAAATGTTATGTTAGCTGGAACAGGTGCAGGAGATTTGCAGGGTACTGATCTTCACACACAAGTCATGGgAGGAGGCGATCAAAATGGTGTCATTTTCCATACAGACATCACAGCAGGTACAGGGGAAGGACACGGACTGAGCCAAAATACTGACTTGACAGGACATTTACACAGTTCAGTGTCACCAGATCCTGTTGGTAAGTAGCCGGAGATTAATTACCAGGTTTCATTCACTGCATGTATTGGTCTGAAGTACTGCATGATGTTTATTCTCCATTGTGTTTTGCTTCACATGTGTGTGATGCTTATTATCTCATCAGCAACTAGTTTAGCCTTAAATCAAGTTGAAACAGATTGTTGAACATATGACAGTTAAGCATTCTGCTGGTCAATACAGTCAATACTACTGGGCTCTactttttaagattatttttgtcTAAGCCATGCTGGAGAGCTGTTTAGTGAAAATAACCCAAAACTTTAtgagggtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109817 lncRNA downstream 91761 26798091 ~ 26800715 (-) True G87980
TU109775 lncRNA downstream 191360 26674078 ~ 26701116 (-) False AMCG00021719
TU109689 lncRNA downstream 454583 26432144 ~ 26437893 (-) True G87884
TU109688 lncRNA downstream 473577 26418680 ~ 26418899 (-) True G87883
TU109687 lncRNA downstream 497297 26394951 ~ 26395179 (-) True G87882
TU109958 lncRNA upstream 514087 27409423 ~ 27409711 (-) True G88095
TU110025 lncRNA upstream 724484 27619820 ~ 27620091 (-) True G88153
TU110026 lncRNA upstream 731784 27627120 ~ 27631668 (-) True G88154
TU110029 lncRNA upstream 739568 27634904 ~ 27636720 (-) True G88157
TU110070 lncRNA upstream 1207994 28103330 ~ 28103666 (-) True G88190
AMCG00021724 mRNA downstream 68178 26805040 ~ 26824298 (-) True AMCG00021724
AMCG00021719 mRNA downstream 173968 26701108 ~ 26718508 (-) True AMCG00021719
AMCG00021716 mRNA downstream 236392 26643754 ~ 26656084 (-) True AMCG00021716
AMCG00021709 mRNA downstream 325538 26564206 ~ 26566938 (-) True AMCG00021709
AMCG00021710 mRNA downstream 420261 26440655 ~ 26472215 (-) True AMCG00021710
AMCG00021723 mRNA upstream 4627 26899963 ~ 26919820 (-) True AMCG00021723
AMCG00021725 mRNA upstream 50836 26946172 ~ 26946690 (-) True AMCG00021725
AMCG00021731 mRNA upstream 109145 27004481 ~ 27009904 (-) True AMCG00021731
AMCG00021732 mRNA upstream 158707 27054043 ~ 27064071 (-) True AMCG00021732
AMCG00021736 mRNA upstream 300756 27196092 ~ 27202305 (-) True AMCG00021736
TU109676 other downstream 738101 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 795692 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 984471 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 1485938 25403650 ~ 25406538 (-) True G87674
TU108932 other downstream 3553992 23338251 ~ 23338484 (-) True G87263
TU109843 other upstream 16138 26911474 ~ 26919844 (-) False AMCG00021723
TU110132 other upstream 1886466 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 2173865 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 2834741 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 3442247 30337583 ~ 30424612 (-) True G88527

Expression Profile