RNA id: TU109874



Basic Information


Item Value
RNA id TU109874
length 238
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G88024
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27057374 ~ 27057611 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTTCTGTTTAAAAGCAATAAGAAAGAGACCCTGAAGTTGAGTATCAGGATGACTGGGTATAGTTGTATAAATGTAGACACTCACCAAGTTCATGAGGGATCTCGTGACAGAGCACCGCTAGTGAGGTGGCCAGCCCTGAATTCCACGAGATTGAAAAGGCAGCTCCCACAGCCAGGCCATCCGCGAAGTTATGGATCCCGTCGCCTATTGTGATCATGTAGGGAAGCATGCGCTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109837 lncRNA upstream 151009 26896725 ~ 26906365 (+) True G87993
TU109792 lncRNA upstream 240092 26813030 ~ 26817282 (+) True G87962
TU109790 lncRNA upstream 246507 26808257 ~ 26810867 (+) True G87961
TU109766 lncRNA upstream 319491 26720909 ~ 26737883 (+) True G87942
TU109760 lncRNA upstream 343898 26710217 ~ 26713476 (+) True G87939
TU109875 lncRNA downstream 2571 27060182 ~ 27060389 (+) True G88025
TU109876 lncRNA downstream 4208 27061819 ~ 27062090 (+) True G88026
TU109877 lncRNA downstream 5952 27063563 ~ 27063951 (+) True G88027
TU109893 lncRNA downstream 81216 27138827 ~ 27139443 (+) True G88043
TU109895 lncRNA downstream 138041 27195652 ~ 27195870 (+) True G88045
AMCG00021727 mRNA upstream 3308 27026147 ~ 27054066 (+) True AMCG00021727
AMCG00021728 mRNA upstream 32467 27011922 ~ 27024907 (+) True AMCG00021728
AMCG00021730 mRNA upstream 45464 27010869 ~ 27011910 (+) True AMCG00021730
AMCG00021729 mRNA upstream 54804 27001117 ~ 27002570 (+) True AMCG00021729
AMCG00021726 mRNA upstream 78475 26954157 ~ 26978899 (+) True AMCG00021726
AMCG00021733 mRNA downstream 63720 27121331 ~ 27123223 (+) True AMCG00021733
AMCG00021734 mRNA downstream 204228 27261839 ~ 27287320 (+) True AMCG00021734
AMCG00021737 mRNA downstream 237478 27295089 ~ 27315993 (+) True AMCG00021737
AMCG00021739 mRNA downstream 274004 27331615 ~ 27332691 (+) True AMCG00021739
AMCG00021740 mRNA downstream 339958 27397569 ~ 27405275 (+) True AMCG00021740
TU109668 other upstream 860298 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 1691397 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 2879384 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 5821294 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 5825886 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 1720704 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 2003276 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 2320964 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 2320964 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 3209791 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile