RNA id: TU109877



Basic Information


Item Value
RNA id TU109877
length 389
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G88027
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27063563 ~ 27063951 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCCACACGACACATCGAGACATTGCACACGTTTCTCCAACATATTCAAAAAGGAGTGAACAGCATTCTCACTGAGGAAGGCTGCTCCAGGTGACACCATGCCCACGACCTTCCCAAAAACCTCGTCTCTGGAGGATGGCGCTCCATTGGACATGTCCAGAATTTGACACAGAAGGAAGCCTGGCCAAAGCACCCGCAGGGATGCCATTGATTTCATATGTGCAGCAGACAAAAGTTGAGAAAAAGTGATGGTTTGAAGAAAGGTCTTCCACTGTATTTATGATTGGATTCTGGGCACTTCAGAGCCGATTTTGGTTCCTATACAGCAGCTTATACTTGTGAATATCTAATCTACGGCTGACtattctctctccttctctacTCCAGGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109876 lncRNA upstream 1473 27061819 ~ 27062090 (+) True G88026
TU109875 lncRNA upstream 3174 27060182 ~ 27060389 (+) True G88025
TU109874 lncRNA upstream 5952 27057374 ~ 27057611 (+) True G88024
TU109837 lncRNA upstream 157198 26896725 ~ 26906365 (+) True G87993
TU109792 lncRNA upstream 246281 26813030 ~ 26817282 (+) True G87962
TU109893 lncRNA downstream 74876 27138827 ~ 27139443 (+) True G88043
TU109895 lncRNA downstream 131701 27195652 ~ 27195870 (+) True G88045
TU109938 lncRNA downstream 344908 27408859 ~ 27409687 (+) True G88076
TU110017 lncRNA downstream 528679 27592630 ~ 27594570 (+) True G88145
TU110023 lncRNA downstream 556405 27620356 ~ 27621880 (+) True G88151
AMCG00021727 mRNA upstream 9497 27026147 ~ 27054066 (+) True AMCG00021727
AMCG00021728 mRNA upstream 38656 27011922 ~ 27024907 (+) True AMCG00021728
AMCG00021730 mRNA upstream 51653 27010869 ~ 27011910 (+) True AMCG00021730
AMCG00021729 mRNA upstream 60993 27001117 ~ 27002570 (+) True AMCG00021729
AMCG00021726 mRNA upstream 84664 26954157 ~ 26978899 (+) True AMCG00021726
AMCG00021733 mRNA downstream 57380 27121331 ~ 27123223 (+) True AMCG00021733
AMCG00021734 mRNA downstream 197888 27261839 ~ 27287320 (+) True AMCG00021734
AMCG00021737 mRNA downstream 231138 27295089 ~ 27315993 (+) True AMCG00021737
AMCG00021739 mRNA downstream 267664 27331615 ~ 27332691 (+) True AMCG00021739
AMCG00021740 mRNA downstream 333618 27397569 ~ 27405275 (+) True AMCG00021740
TU109668 other upstream 866487 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 1697586 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 2885573 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 5827483 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 5832075 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 1714364 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 1996936 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 2314624 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 2314624 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 3203451 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile