RNA id: TU110017


Basic Information

Item Value
RNA id TU110017
length 1630
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G88145
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27592630 ~ 27594570 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGTATTACAGAGTATTATTGAGCATTGAAAGTGTGTAAATTAGATAAAAAGTGTATTGTCTACCAATAGCACAGTAATATTACTGAATTGCCTCTtgtaacaatgtattttcaaataaaataggATATGATAATGTAATATACTATTTTCAGCCAGTTCCAGTCTTAACCACAAAAGCTTGTGAAAGGTGAGACTCTATATCTCCTTTAGAAGCATTACAAAGAGGACTAACACATTAAAGGACCAGCAAAAGCTGCAGCAGTAAAAAGACGACAATATTATATTTGAGCCTTTAAAACCTAACTTGTGGGGATTCAATCAATCTCAAAGACCTGTAGTACGAATGCTGTTTGTTCTGCTGCGGCTGCTACTAACATCAACCTTGTGGTCGGTGGCAATCAGGTCACATGCTGCAGCACAAGCCTGTGTAATGTTAACAGCTCCACGGTGGAAAGACTCAACCTCCTGCTGCTGGTCTTCCCCTCAGCTTTACTTGCACTGTTCACCTTGGGAAAAGCATAACAACACTTTCAAAGAATGCTTTTCTGACGAGATGGTCTACATTTGTGGTTTGtcaattgatttattgtttgttatagTTTTCTTAGGGTTACAGTTAGggtaaaccatttaaaacatatgttgaagaaaatatttctgCTGTTAAGTGATAGTTATTACATGTGTTAACTGGCAATATATACGTCTTATAGACATGTAATAAAGTTTAATATATGTTGCTATTATTTTTAGTAGACAccattcataaataaacaataatacaatgttttctatCTGATTACTAACAATGATTTTATGTCTATTCATACCCTTGTTGTTaacatgtaataaatacaaatctgtttcaGAATATTTACTGCATTTGCCTTCTAGGAAATACAGCATGTACTATTTTGTTAATTCCAGCATTGATTTGTGACAATGCCAATGTCACAGAAAGGGTCCTTTCATACCACATTCCTCAAGCAATTTACTCTTATCACCCTTGTTAAAGGGGCTACCCTCTCTTTTGCACTATTTACACTTTTGCCACTATTGCACATGCCTAAGAAAACAGTAACCATTACTCTACACCTGGCCCAAACTTTATCACGGTTTTTCACTCCAGCCCAGAATTGAACATTACTGTACTACAGAACCTGAGTCTAAACCCAGATCCTAATCAGATCAGGTTAGGGATAGGTATCCAAACAAGACGCATGCCCATGAAACTTCTGACTGTTTCAGTATTACCTGATGCTGCTATATAGGACAGGCATTTCCCAGCCATTTTAACAAAGCTACCAGAACCACACTGATCCACATCCATGGCAAGCTCTGTCCGTCTGCCTCACAGGAATGTAAAATCTCAGAGATTAGACTGCAAAATCAAATAAcaagaattttaaaatgaagtgctatgaacaggaaaggaaaaaaacatatttgagtATAATACAGTGGACATTTTTAGACTTGAGACACATATCCTGACAATGATATCCCAAAGACCAAGATTTcatgtgctgtactgtaatattGAAATCCAGCTTCCAATTAGActttttcagtgtatttaataGAAAACCTTTCTCTTAATGTTTTCTCTATTTACCCTTATTATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109938 lncRNA upstream 182943 27408859 ~ 27409687 (+) True G88076
TU109895 lncRNA upstream 396760 27195652 ~ 27195870 (+) True G88045
TU109893 lncRNA upstream 453187 27138827 ~ 27139443 (+) True G88043
TU109877 lncRNA upstream 528679 27063563 ~ 27063951 (+) True G88027
TU109876 lncRNA upstream 530540 27061819 ~ 27062090 (+) True G88026
TU110023 lncRNA downstream 25786 27620356 ~ 27621880 (+) True G88151
TU110022 lncRNA downstream 32482 27627052 ~ 27631654 (+) True G88150
TU110028 lncRNA downstream 38345 27632915 ~ 27636756 (+) False AMCG00021745
TU110035 lncRNA downstream 293988 27888558 ~ 27982127 (+) True G88161
TU110115 lncRNA downstream 1103308 28697878 ~ 28698085 (+) True G88225
AMCG00021742 mRNA upstream 9365 27552085 ~ 27583265 (+) True AMCG00021742
AMCG00021741 mRNA upstream 65663 27512444 ~ 27526967 (+) True AMCG00021741
AMCG00021740 mRNA upstream 187355 27397569 ~ 27405275 (+) True AMCG00021740
AMCG00021739 mRNA upstream 259939 27331615 ~ 27332691 (+) True AMCG00021739
AMCG00021737 mRNA upstream 276637 27295089 ~ 27315993 (+) True AMCG00021737
AMCG00021746 mRNA downstream 18191 27612761 ~ 27620292 (+) True AMCG00021746
AMCG00021745 mRNA downstream 38385 27632955 ~ 27637084 (+) True AMCG00021745
AMCG00021748 mRNA downstream 48714 27643284 ~ 27680343 (+) True AMCG00021748
AMCG00021749 mRNA downstream 133223 27727793 ~ 27773527 (+) True AMCG00021749
AMCG00021750 mRNA downstream 222513 27817083 ~ 27862355 (+) True AMCG00021750
TU109668 other upstream 1395554 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 2226653 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 3414640 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 6356550 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 6361142 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 1183745 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 1466317 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 1784005 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 1784005 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 2672832 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile