RNA id: TU110023


Basic Information

Item Value
RNA id TU110023
length 1525
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G88151
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27620356 ~ 27621880 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATAGCATTTTGAAGAGAGCTGGGCTCACAATCTGACTAAGCTGCACTTGTCACTCCTCATTACTTACAGCTATAAAAATAGATCCACCTAACAATGGGAAGAGCACTGACAAGACAGGTACTTCATGATACATAAgtacttctttcttttcttttttttttgtgtgtttcacttaaaaaagaaaagaaaaagaaactacTTTCTCAGTGTTGGTGAGTTGCTGGTATTGAGTGGTAAAATACTTTAGATGTGTCCAGGTGagattttctgttttggatGGGACTGGTTCCCTCCACATTTGCTTTTTAGCACCGTGCTCATTTATCTATTTAAGTTTGTGTCATTTTCCTAAGCAGTGGATGTTTGATTCCTATGGAGGATACATTCTAGGATAAATCCAAGCGGGTTTTAACCATACACCTGgacaaaaagtgaaaatgggatTCATACCTTTTATTTCAATCAGTCAAGAAAACGGATGACCAATGCAGTTGGTGTTAGTCAATAGGCATCCCTCTGTTGCACTGCATGTTtctcttttgaaatattttaatattactctGTCATATTTGCTATGAGAAGCCTATGATCTTTTACAACTAGGTATATAGCGTCAGATGGAaccataattattataatgggGTGGAGCTTGAATCTATTATATCCACCAACATATGTAAGGGTTGGCGAACACTACTGTACTGTGATCTGCAACAGTTTTCTTAAACTCTTTAGCGCTTGCCCTCATTCGAAATGGGCGTCAAGTCTCAAGCCTTCATTCTTTCCTATAACTACGTCTTTTGTAATTAAGACCAagactgcagattttttttttttctaaagcagGATAACTTTCCTACCCGTGACTCTTGActtgtttactttcatttttacaaCAGTGTTAATAAATAATGGCGCTCTTCCTCTGAAAGTGTCTTAAATTACAAAAGGAGGAATGAAATATCAGTCCAGGGTTGTTTTAATTAGGACTATTTTAGATTTTTGCTCACTGCTTAAATATAAAGATAGGAAGACTTTTTAACTTGTTGAAAGTAAATGAAGCTGAGCATGCATTGGCTTTTTATTTAAGCACAATAGTGTATTTAATAAAAGATTTAACTAAGACTTTATACATAtcaagttttaattatttacagaataCATATTAGTACTATTGTTGATGTAACTTTTTAGGACagtagatatttttaaaatcatgattATGTATATGATGCATTATTAATACTGTAGAGACTGGTCATTTTAAAGTGTGAAGCTAATTTGCACATCTTAGCCACTTCCTGGATACGATGCAAATTTCTCTATATATGCcgtttttaagaaacaaacaaagagccATGGTATTTTGTCAGGATTTCCTTTAGCTTTTATTTGTTCGTGCTGTATTTCACAATTACTGTatgatttatttccccccaatgTAAGATTAGGAGTTACTGTATATAGTGCATCATTTGGGTTAAATTGTCAGTTCTTCATTCAGCATATGCAGAATAAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110017 lncRNA upstream 25786 27592630 ~ 27594570 (+) True G88145
TU109938 lncRNA upstream 210669 27408859 ~ 27409687 (+) True G88076
TU109895 lncRNA upstream 424486 27195652 ~ 27195870 (+) True G88045
TU109893 lncRNA upstream 480913 27138827 ~ 27139443 (+) True G88043
TU109877 lncRNA upstream 556405 27063563 ~ 27063951 (+) True G88027
TU110022 lncRNA downstream 5172 27627052 ~ 27631654 (+) True G88150
TU110028 lncRNA downstream 11035 27632915 ~ 27636756 (+) False AMCG00021745
TU110035 lncRNA downstream 266678 27888558 ~ 27982127 (+) True G88161
TU110115 lncRNA downstream 1075998 28697878 ~ 28698085 (+) True G88225
TU110122 lncRNA downstream 1152991 28774871 ~ 28775193 (+) True G88232
AMCG00021746 mRNA upstream 64 27612761 ~ 27620292 (+) True AMCG00021746
AMCG00021742 mRNA upstream 37091 27552085 ~ 27583265 (+) True AMCG00021742
AMCG00021741 mRNA upstream 93389 27512444 ~ 27526967 (+) True AMCG00021741
AMCG00021740 mRNA upstream 215081 27397569 ~ 27405275 (+) True AMCG00021740
AMCG00021739 mRNA upstream 287665 27331615 ~ 27332691 (+) True AMCG00021739
AMCG00021745 mRNA downstream 11075 27632955 ~ 27637084 (+) True AMCG00021745
AMCG00021748 mRNA downstream 21404 27643284 ~ 27680343 (+) True AMCG00021748
AMCG00021749 mRNA downstream 105913 27727793 ~ 27773527 (+) True AMCG00021749
AMCG00021750 mRNA downstream 195203 27817083 ~ 27862355 (+) True AMCG00021750
AMCG00021751 mRNA downstream 244255 27866135 ~ 27980501 (+) True AMCG00021751
TU109668 other upstream 1423280 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 2254379 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 3442366 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 6384276 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 6388868 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 1156435 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 1439007 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 1756695 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 1756695 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 2645522 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile