RNA id: TU110026


Basic Information

Item Value
RNA id TU110026
length 4549
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G88154
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27627120 ~ 27631668 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAATATACAGtcaggccaaaaaaaaaaaattaagtgaacTATATTAATATCAACTTCATAAAgtgatacattttcacattatgTTCTAACAGGGTTTACAGCATATTGGAGTTTTATAAGTgttaacaaaaggaaaaaatgtaaaatctatgCTCGCTTACACCTTACTTACAATAACAAGGATCTTTGCAGTGAATCTGCATGAAAATTAAAACGGCGAAAGACCTCACCGTAAAAGGAATGTCAGCAATTCATTTTGGCATGTGgcgaataatacaaaatatgtaatccATGGCTTGTGTTCAAAGGACATTGTGCAGTATGCCTGTCTGAATAGAAACTTTGGTCACTCATCCATGGTTTAATGAACAGAGTAGATGTACTATCCCAACACAGTTTTAAAGGGTATGATTTTGTGGAGGTAGATGGCTAAAGTTATGATTTCAATGGGTTTCCTAGCTGATGACTGTAATGCCTTCAAGTCTGTTAAGTGTAGCAAGATTTAAACGGCgcatttttgtacttttaaggCCCATCTGTGCTTCCATATCCCTTATAGAATTCTAAAGCTATTTAAGACAAAGGTGAGGTACAGGGAGTGGTTTATCTGGAGCAGGTACAGCCCTTCAGTGCCAATATTCAAGTTATCATCAGTTTTCAAGTCACATTGCTTGAAAAGGAAATGCTTGGCTAAAACATTCCACTTGACCTAATACATACACAATGCTGAAATCTCATGAAGTAACAATGCGTTCTAGCTAGGATAGCggctgatttttgttttacagcccAGTTAGATTTCCACAAATGACACTGTCTATCTACACACTTGTGGATGCCATTTGGCTAGGATCAATGAAGAAATGGTATTGAACTCTCCGATCAATAGGCTACTAGGAACAGACTGGGCACAATGCGTCAAATAGCCTCCTTAAACTATTAACCTCATCTTCTTTTCCAATAGTACTTAAGTTCTTTTATAGTTTCGATCTACAACAActggttcattttaaaatacagctctACACACAAGCATAAGTATTTAAGTTTACAGTTGTaccattaaaacattacaattttcCATCACATGAACTGCAATACATAAATCTAAAAGTTATGTTCAAGTTAAATAACATTTAGCCTAAGCAAAACTATACTTAGAAACACCAAATATACACCGGAATAATTTACagcatcaatattttattttacaaaaggcAGGTTTGGGCTACACTGTAACATTCTAGTCTAAAgagtttaaacattttgcattttgattacGGGGCACAAGTAGAAGAATAGCTTAAATGTGCCTCAATCAATTTTCAAAAGAAATTCACAAAGTGTACCAAGGGCTTTTAcaaaatttgaatttcaatgAAGAGTGCTTCACACATGCATGAAAGATCAAGTCAAAGGCAAGATGCACAGTGCCTTGTGAACATCAAGCATAACAATTCATGGGGGGAGGTCTTAATATGGAGGAGTAAGTCCACACAACtaagcagcaaaaaaaaaaaagaaagaaaaaaatcaaatgcagcATATTTCAGGCTTATGAGGTActtcatgtattttataaaatttcTCAAAAGTTACTGAATTTGATTTCTTTTAATTCCTTGTTAGCATAAAATACCTCGTCATCTTGAATTTTTATTTGCCCAGTTTATTAGGCAATCATGTAACTGCTTAGAAAGTGCAAAAAAATACTGATCGTTCTATGCAGCATATTCAAGGATGCATGATAATttcttaaatgtgtttgtgtgtattctcacacacaccaacacacactcatacacgcactttacatctctctctgtggcgccgtgaaaaacaaaaggataaCACCCATAAAAGCTAACAACTGGACAAATGCTTATACAGAAAGGCACACAAAATAAGGGATGTTTTCAGCCAAGGAGGCATGGATAACATACGATAACTGTTGAACAGTTCAGAAACTGCGCCAGAACAAGACATTTCCTGACAGACAAGCTTTGTACCTTCAAACTGAATAATAAGTCTCTTACATTATTGAAATAGAATATGCAGTCAGTATGTGTATTATAACAAAAtactttctaaaaataaaaaatataattcattcattatttgcctaataaaatgtagtacaaaaaaagcaaaatggtgCCATCACCAACTCTAACGGGGGAGTCGTAGAACTTCGGTTCACTGACACCGCTCAGAAAGCAAGATTAATGTTAGTGGCCAACTTACTATAAAAAGTAGCTTTGGTAAATTAATTAGGATGGGCTGCAGACAAAattctcaaaataaaaccatactattttaaaagaataaactaTAATAACTGGGGAGTATGAAGCATTTCAAATCATATTTCCAGCTTTCTTCACATCAGGAAACCAATCTTCTACTTATTTAAGTAGCTATAAAATGGAGATGACTTTAAAAGCTCACTGCTCTCATACCTCATTTAAATGAAGTAATTATTGCTCAGTTTTGCACAGCACTAAAGTAGGCTGTTTGGGGAAACAGACCCCCAATGCTTTTGCAGTAACAATCATGATAGGTGAGGTTCTTTCAGGTCTTAATTGCTCCCCCAAAGAGAGTTAATAAGTACTAAGAGAAAAAGCATTGTATCCATCCTATATGAAGTCCTATATGAAGCAGAGCATTTTCATTACCCtctatggggggaaaaaaaagaagatttAACTGAAAACCATCTTGCTTATTGCATACTACATTTTACAAAGGAggaaaaacaagatttaaaatgtatcatttatgGAGGCAAAAACCCTTTATACTTTTGTTTCCAATAACAAAATTGGTCCCCTGAACTCCTATGatacagatttattaaaacatccCTCAAAATAGTCCATAATCACCAATTACTTATAAAACATCAATTACAACAAGTTACATAGTATTGGCTGTTTGGTCACTAttggtcatttttattttttatgttaggGATTACAATTCTAGCACCCTACTTTCATTCTGAGGTAGATCCAgttggtttaaaaacacaaaaacaaaaaagccaggTTAACCCAAGGTTATTAATGCCTCAAGCAAAAATAGTACAACAtaaaaggtttgttttaatcttgCAAAGGTTTTGTTGTGCATCTTAAATTAAGTGACTATGGCATTGGTGGTTATGTTTAGAGCCCTAAAACACTTATCTGTGTTTTGCATGTTCAGGATTAAATATCTCTGGGTGTCATCCATTAAGGGAAAACATCTTGGCAAAAATGCAAACCACCAGAGGCTAGTACCGACTGCAGTGTCAGATGCACATGTTTTTAGGATCAAAGTTAGTTCAGTCAAGGTTTGAGAGAAAGCGGATGGATGCCACCAAGAACCAGCTAGGAGAGTTGACTGTCCAAGCAAGGAAGAGTGAGTAAAATCCTCCCTAAGCATACAGAACAAAAAGCTGTGAATAGAAACTCATTAGTAGATCATTCTTAAAGTATTTTAGGAAGGAATCCAATTCAACCAGAAGTGCCAGACTGAATAAAAAGagaccaagaaaaaaaacagaaaaaatccaaaacatttctgcagttcCCCAACAGTTGCACAAACACCACCACGTATTgggtatagaaaataaaaacttttccCTTCAATGACAGCTATATCATTGTGGGGAACACAGACATGGTTCATTTGCACATGTATtgtcaatacaaaaacaagttgaggaaacaaaaacaaaaacaaaaaactagaCAAGTGTCTAAAAATAACAGTCTGGTTCTAATGAGGCAGTGGGTACTACAAAAAAAGTTACACTTCACTGTTGTACATTTTACCTTACAAGAAGTACAGTATACTAACACGTTACtagaaagaaatggaaaagaaggagagaataaaaaaaaacttaaatctgTCCCATGATACCATTTGAGTTTCTTATTCAGTGCACATCTCAAAACAGCTGCAACCCCAGCTCCAAATCCCTCATTTATACAGTTAATCTTCAAAAATATGATTAACATCTTTCACGACAGGTAAAGTGATTTAGGATTTAATTATACACCAATATTTAAATGGCAATATCAAGCCATCAGGAAGAAACCCTCTTTATTCCACTTTTGCAAGCATCACAGTACACCTCAGGTATTGCATTCGGTCCAATGCCCATAAAGGACcaacagaataatttaaattttcatATGTTTAAACTTGATTGATGGCAATAtcctttgttcattttaaaagggtgcatcaaatacatttaacttcCTTGAGGTACAATATCAACATCACTGATAAAATGTATGATCTTACTTATATTCCTTTCAGGAGGTTGAGAAATTGAGAAGCCCATTGTGTTCCTCCTTTTATCCATGGGATAAATACAATATCCTCACAGACTTCTTGAATACAATTAACACAAACAAGGAAAGTGTGCACAGTTGCTTTCACAAGGTTACATTACTTCAGTGTGAAAAAGTATTGTAATGTGTAAgggcaataaaaataaatacatttatgacTGCGATATCAGTCACAATAGCTGTGATATTTTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110025 lncRNA downstream 7029 27619820 ~ 27620091 (-) True G88153
TU109958 lncRNA downstream 217409 27409423 ~ 27409711 (-) True G88095
TU109835 lncRNA downstream 731784 26892476 ~ 26895336 (-) True G87992
TU109836 lncRNA downstream 731784 26892476 ~ 26895336 (-) False G87992
TU109817 lncRNA downstream 826405 26798091 ~ 26800715 (-) True G87980
TU110029 lncRNA upstream 3236 27634904 ~ 27636720 (-) True G88157
TU110070 lncRNA upstream 471662 28103330 ~ 28103666 (-) True G88190
TU110071 lncRNA upstream 500898 28132566 ~ 28132863 (-) True G88191
TU110088 lncRNA upstream 635044 28266712 ~ 28267553 (-) True G88201
TU110116 lncRNA upstream 1066210 28697878 ~ 28698110 (-) True G88226
AMCG00021744 mRNA downstream 39981 27584420 ~ 27587139 (-) True AMCG00021744
AMCG00021743 mRNA downstream 186858 27416270 ~ 27440262 (-) True AMCG00021743
AMCG00021738 mRNA downstream 335124 27287252 ~ 27291996 (-) True AMCG00021738
AMCG00021735 mRNA downstream 365769 27236574 ~ 27261351 (-) True AMCG00021735
AMCG00021736 mRNA downstream 424815 27196092 ~ 27202305 (-) True AMCG00021736
AMCG00021747 mRNA upstream 6914 27638582 ~ 27640909 (-) True AMCG00021747
AMCG00021755 mRNA upstream 584154 28215822 ~ 28218715 (-) True AMCG00021755
AMCG00021756 mRNA upstream 602972 28234640 ~ 28239140 (-) True AMCG00021756
AMCG00021757 mRNA upstream 954508 28586176 ~ 28591802 (-) True AMCG00021757
AMCG00021767 mRNA upstream 1411830 29043498 ~ 29047472 (-) True AMCG00021767
TU109843 other downstream 707276 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 1472745 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 1530336 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 1719115 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 2220582 25403650 ~ 25406538 (-) True G87674
TU110132 other upstream 1150134 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 1437533 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 2098409 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 2705915 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 3246180 30877848 ~ 30888212 (-) True AMCG00021820

Expression Profile