RNA id: TU110035


Basic Information

Item Value
RNA id TU110035
length 2086
lncRNA type read_through
GC content 0.41
exon number 3
gene id G88161
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 27888558 ~ 27982127 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGTAACAGCCCTTTGCCTACTCTCATTCCCTTAAGCACTGCGGAGTGAGAGACGTCCTGGTGAATGGGAAGCCCTGTGATTGTGATATTGTAGCTGATTGCAACGTAGGAGACCCTGTGCCCTTGGAAGTGAAGCTGACCAATGGGAGTAAGCAGGCTGTGGGCCCCTTCGCCCTGACCATCATTCCCTTCCAGGACTACCAGAACGGAGTCCACAACTACGACCTGCAAGATGCTGTCACCTTCATCGGCTCCAACACCTTCTACATTGACACGGTGAATCCTACAGAAAACTGCATCTGTGTTGGGGCTCTTCTGTTCCTCTACACTGGAGACTTTTACCTGAACATCAAGTTTCAAGATGACAACGCGGGCCGAGAGCTTCCTCTGGCCTGGTTCTGCTTACCCAGCGTTCACATCAAAGCCCTGGACCCGGCGCTCCAGCCCAACTCCAAATGATCAGTCCTCCCCACTGCATCCTCCCTCTCAGGCTTCTGTAAATCTCGGGTTAATGTTTATTGAAGCAACCGTCATCCGCTGAGAAAGTAACACTGCAGAGACTCAACTGAATGAAAAGTAAATCCAAAACGGCTTTGCAATTTATCTGCACATCTCCTACAATGTATCGTGCAATATTTATCACAGTTTACTTCATTATGTTTTCTGGTCTTACTTGTTGAGTACTGTTGTCTTTTGgccagggattttttttttttgtattatttttgtataatttgacGTAAttagcagaaacaaaatgtcacCTTCTTCTGAAATGATTGTCCTTATCATAGGTTTaaacagtatatgtatatatatccaaGAGCAATCTATGTTTGATAACATCACTCATTGGAAAACAggcaattgaaaataatatacaaactaTGCCTCAGTAATGTACTATACATTTGTCTCTGATATGGACACTATGTTACATAAGGATGAGATTGCAGTACCACCTCTGCTGGAACAAAATGAATCACTGAACGATGTAAGCATATCTCTTAAAGTTACTTTAGGCACAGAGTTCCAGAATGGCTTTGATCACATTGAAAATGGGTTAAGTAGTCTCAGTTTAGCGATTGGAAACAGGCATTATAGAATTGTATTTGAGCAGCAGTTTCAGGCACGGAGGGAGATAGCATAGATTATGTCTGGGTTTTGGCTCGAGTGAACTCAATCTGAGCCCGTGCATTGGTTTATTAGCCACTGAGTAGAGTAATCTGTTGTAATCCCTTATGGGTATTCCTGTAATCAGATGCCAGTGAAAATAAGGCCACATTACTTCACTTATTTAGGTTCTCACCATTTTATTTGGATggggaaatgttttattcttagTTGTTCCTTCAGATGTGTGGTCCCAGGAAGGTAATTGTGGAATGAAATGTAGCAGAGCATATCTCGGGCAAGACATCCTACTGTCCACATGTTGTTACccattaaataaaccatattATCAATAAGTGAGTGTTATTTGCTCTGCCACACTAAACAGTGCAGTGAACAGCATCTGACAGACCTTTTAACCCCAATAATGTTGACATAAAGCCAGTATATTGAAATAGGACCCTGCTGTCAAGAAGCCTTGGCATCGCTTCACAATTTGCTCAACAAAGACATGCCACCCCACCTATATTCTACCCTGTCTGAAATGAGAGGTCTCTGTCTCAAACCTTCAACTCAATACATTCAGgtatttgaagaaaatgttgtgaagCCAAGGagtgtgtataaaataaagcattacattttgatatttcCATTGCCAACTTTTTGAAATCAGTTTCATAAGAATGATTGTAGATCAGAAAAGAATAATGTTGTGTAGTCTTGCACACTGTAATTCCTGATGGACTTCTCTCTTGGAGATTACCAACCAATATGCCAATTTTCTGGGTTATTTAGCTGCTTTGTGATCTGTGTGTTTTAGGGGATACAGTTGCTTCTAGTGCGGTTTGACCTTTCTCGTTGGAATGCAGTACCATtgttaatataaattgaaatgcCTGTAAAATTCAACATTGTGAGTACCTACATTTCAGCACGGTTTtatgtgaataataaaaattaatgaaGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110028 lncRNA upstream 251802 27632915 ~ 27636756 (+) False AMCG00021745
TU110022 lncRNA upstream 256904 27627052 ~ 27631654 (+) True G88150
TU110023 lncRNA upstream 266678 27620356 ~ 27621880 (+) True G88151
TU110017 lncRNA upstream 293988 27592630 ~ 27594570 (+) True G88145
TU109938 lncRNA upstream 478871 27408859 ~ 27409687 (+) True G88076
TU110115 lncRNA downstream 715751 28697878 ~ 28698085 (+) True G88225
TU110122 lncRNA downstream 792744 28774871 ~ 28775193 (+) True G88232
TU110127 lncRNA downstream 848779 28830906 ~ 28831323 (+) True G88237
TU110138 lncRNA downstream 920271 28902398 ~ 28902614 (+) True G88248
TU110140 lncRNA downstream 939502 28921629 ~ 28969948 (+) True G88249
AMCG00021750 mRNA upstream 26203 27817083 ~ 27862355 (+) True AMCG00021750
AMCG00021749 mRNA upstream 115031 27727793 ~ 27773527 (+) True AMCG00021749
AMCG00021748 mRNA upstream 208215 27643284 ~ 27680343 (+) True AMCG00021748
AMCG00021745 mRNA upstream 251474 27632955 ~ 27637084 (+) True AMCG00021745
AMCG00021746 mRNA upstream 268266 27612761 ~ 27620292 (+) True AMCG00021746
AMCG00021754 mRNA downstream 56751 28038878 ~ 28189161 (+) True AMCG00021754
AMCG00021753 mRNA downstream 224377 28206504 ~ 28212926 (+) True AMCG00021753
AMCG00021758 mRNA downstream 335145 28317272 ~ 28338520 (+) True AMCG00021758
AMCG00021763 mRNA downstream 524250 28506377 ~ 28509474 (+) True AMCG00021763
AMCG00021761 mRNA downstream 527502 28509629 ~ 28510035 (+) True AMCG00021761
TU109668 other upstream 1691482 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 2522581 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 3710568 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 6652478 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 6657070 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 796188 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 1078760 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 1396448 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 1396448 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 2285275 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027579 True 2983 mRNA 0.31 2 NC_007130.7 4443285 ~ 4447733 (+)