RNA id: TU110070


Basic Information

Item Value
RNA id TU110070
length 337
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G88190
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28103330 ~ 28103666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

accgatcagccataacattatgatcactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcagagttgatgtgttagaagcaggaaaaatgggcaagcgtaaggatctgagcgactttgacacgggccaaattgtgatggctagatgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcggccaaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110029 lncRNA downstream 466610 27634904 ~ 27636720 (-) True G88157
TU110026 lncRNA downstream 471662 27627120 ~ 27631668 (-) True G88154
TU110025 lncRNA downstream 483239 27619820 ~ 27620091 (-) True G88153
TU109958 lncRNA downstream 693619 27409423 ~ 27409711 (-) True G88095
TU109835 lncRNA downstream 1207994 26892476 ~ 26895336 (-) True G87992
TU110071 lncRNA upstream 28900 28132566 ~ 28132863 (-) True G88191
TU110088 lncRNA upstream 163046 28266712 ~ 28267553 (-) True G88201
TU110116 lncRNA upstream 594212 28697878 ~ 28698110 (-) True G88226
TU110118 lncRNA upstream 657530 28761196 ~ 28761972 (-) True G88228
TU110130 lncRNA upstream 674627 28778293 ~ 28778685 (-) True G88240
AMCG00021747 mRNA downstream 462421 27638582 ~ 27640909 (-) True AMCG00021747
AMCG00021744 mRNA downstream 516191 27584420 ~ 27587139 (-) True AMCG00021744
AMCG00021743 mRNA downstream 663068 27416270 ~ 27440262 (-) True AMCG00021743
AMCG00021738 mRNA downstream 811334 27287252 ~ 27291996 (-) True AMCG00021738
AMCG00021735 mRNA downstream 841979 27236574 ~ 27261351 (-) True AMCG00021735
AMCG00021755 mRNA upstream 112156 28215822 ~ 28218715 (-) True AMCG00021755
AMCG00021756 mRNA upstream 130974 28234640 ~ 28239140 (-) True AMCG00021756
AMCG00021757 mRNA upstream 482510 28586176 ~ 28591802 (-) True AMCG00021757
AMCG00021767 mRNA upstream 939832 29043498 ~ 29047472 (-) True AMCG00021767
AMCG00021771 mRNA upstream 1158786 29262452 ~ 29264433 (-) True AMCG00021771
TU109843 other downstream 1183486 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 1948955 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 2006546 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 2195325 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 2696792 25403650 ~ 25406538 (-) True G87674
TU110132 other upstream 678136 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 965535 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 1626411 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 2233917 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 2774182 30877848 ~ 30888212 (-) True AMCG00021820

Expression Profile