RNA id: TU110115


Basic Information

Item Value
RNA id TU110115
length 208
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G88225
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28697878 ~ 28698085 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttctttgtgcttcttcaaaagagcttggacagcacatctggaaacccctgtctgccttgaagtttctgcctgggagagaccttgctgatgcagtagaactaccttgtgtcttgttgctgtgctcagtcttgccatggtgtttgacttttgacagtaaactgtcttcagcaacctcaccttgttagctgagtttggctgttcctcacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110035 lncRNA upstream 715751 27888558 ~ 27982127 (+) True G88161
TU110028 lncRNA upstream 1061122 27632915 ~ 27636756 (+) False AMCG00021745
TU110022 lncRNA upstream 1066224 27627052 ~ 27631654 (+) True G88150
TU110023 lncRNA upstream 1075998 27620356 ~ 27621880 (+) True G88151
TU110017 lncRNA upstream 1103308 27592630 ~ 27594570 (+) True G88145
TU110122 lncRNA downstream 76786 28774871 ~ 28775193 (+) True G88232
TU110127 lncRNA downstream 132821 28830906 ~ 28831323 (+) True G88237
TU110138 lncRNA downstream 204313 28902398 ~ 28902614 (+) True G88248
TU110140 lncRNA downstream 223544 28921629 ~ 28969948 (+) True G88249
TU110198 lncRNA downstream 566742 29264827 ~ 29268282 (+) True AMCG00021772
AMCG00021762 mRNA upstream 187063 28510456 ~ 28510815 (+) True AMCG00021762
AMCG00021761 mRNA upstream 187843 28509629 ~ 28510035 (+) True AMCG00021761
AMCG00021763 mRNA upstream 188404 28506377 ~ 28509474 (+) True AMCG00021763
AMCG00021758 mRNA upstream 359358 28317272 ~ 28338520 (+) True AMCG00021758
AMCG00021753 mRNA upstream 484952 28206504 ~ 28212926 (+) True AMCG00021753
AMCG00021760 mRNA downstream 69330 28767415 ~ 28804176 (+) True AMCG00021760
AMCG00021759 mRNA downstream 129901 28827986 ~ 28830377 (+) True AMCG00021759
AMCG00021764 mRNA downstream 293505 28991590 ~ 29005897 (+) True AMCG00021764
AMCG00021765 mRNA downstream 309311 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021766 mRNA downstream 327478 29025563 ~ 29041941 (+) True AMCG00021766
TU109668 other upstream 2500802 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3331901 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 4519888 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 7461798 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 7466390 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 80230 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 362802 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 680490 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 680490 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 1569317 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile