RNA id: TU110118


Basic Information

Item Value
RNA id TU110118
length 777
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G88228
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28761196 ~ 28761972 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaaaaacaacaaaaaaatccagaaaaacgcatttcaaaaaagttatacattgatttgcatgttaatgagggaaataagtatttgatcccctatcaatcagcaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagggagtgctcctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggtcAAGACCAAaaagctgtccaaggatgtcagggacaagattgtagaccttcACAAGGATGGAATgtgctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgaaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtccccaagaaaacaattggtaacacgctacgctgtgaaggactgaaatcctgcagcgcccgcaaggtccccctgctcaagaaagcacatgtacaggcccatctgaagtttgccaatgaacatctgaatgattcagaggagaactgggtcaGATGAGacaagtgttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110116 lncRNA downstream 63086 28697878 ~ 28698110 (-) True G88226
TU110088 lncRNA downstream 493643 28266712 ~ 28267553 (-) True G88201
TU110071 lncRNA downstream 628333 28132566 ~ 28132863 (-) True G88191
TU110070 lncRNA downstream 657530 28103330 ~ 28103666 (-) True G88190
TU110029 lncRNA downstream 1124476 27634904 ~ 27636720 (-) True G88157
TU110130 lncRNA upstream 16321 28778293 ~ 28778685 (-) True G88240
TU110131 lncRNA upstream 17371 28779343 ~ 28779710 (-) True G88241
TU110133 lncRNA upstream 23194 28785166 ~ 28785661 (-) True G88243
TU110134 lncRNA upstream 49791 28811763 ~ 28811965 (-) True G88244
TU110135 lncRNA upstream 68186 28830158 ~ 28831224 (-) True G88245
AMCG00021757 mRNA downstream 169394 28586176 ~ 28591802 (-) True AMCG00021757
AMCG00021756 mRNA downstream 522056 28234640 ~ 28239140 (-) True AMCG00021756
AMCG00021755 mRNA downstream 542481 28215822 ~ 28218715 (-) True AMCG00021755
AMCG00021747 mRNA downstream 1120287 27638582 ~ 27640909 (-) True AMCG00021747
AMCG00021744 mRNA downstream 1174057 27584420 ~ 27587139 (-) True AMCG00021744
AMCG00021767 mRNA upstream 281526 29043498 ~ 29047472 (-) True AMCG00021767
AMCG00021771 mRNA upstream 500480 29262452 ~ 29264433 (-) True AMCG00021771
AMCG00021770 mRNA upstream 506442 29268414 ~ 29271589 (-) True AMCG00021770
AMCG00021774 mRNA upstream 511120 29273092 ~ 29275349 (-) True AMCG00021774
AMCG00021773 mRNA upstream 519584 29281556 ~ 29285963 (-) True AMCG00021773
TU109843 other downstream 1841352 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 2606821 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 2664412 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 2853191 25905444 ~ 25908005 (-) True G87806
TU109433 other downstream 3354658 25403650 ~ 25406538 (-) True G87674
TU110132 other upstream 19830 28781802 ~ 28783281 (-) True G88242
TU110186 other upstream 307229 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 968105 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 1575611 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 2115876 30877848 ~ 30888212 (-) True AMCG00021820

Expression Profile