RNA id: TU110122


Basic Information

Item Value
RNA id TU110122
length 323
lncRNA type intronic
GC content 0.30
exon number 1
gene id G88232
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28774871 ~ 28775193 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAGAACATGCATCTGATATCAAAGGAATGCCATTTGGTAGTGATGAAAGATTGATGAAGTTGCCATCTGGAAGTAacattctttaaatgtattattcagtgTATCTTTACATATAATCCCTATACATGTTCTAGccatgttattttcttttttttaatcaaattattacaTGATTTACAGCTGTGATCTCTTCTTTACTACTTGAAGATCTTTTGGGGAGAATTTGTTGATTGCAAATTATGAAATGGATGTATTGGTTTGTCATGTACTGTTAGctgtacattaaaatgtgactttttgcaatataaaataaaaagctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110115 lncRNA upstream 76786 28697878 ~ 28698085 (+) True G88225
TU110035 lncRNA upstream 792744 27888558 ~ 27982127 (+) True G88161
TU110028 lncRNA upstream 1138115 27632915 ~ 27636756 (+) False AMCG00021745
TU110022 lncRNA upstream 1143217 27627052 ~ 27631654 (+) True G88150
TU110023 lncRNA upstream 1152991 27620356 ~ 27621880 (+) True G88151
TU110127 lncRNA downstream 55713 28830906 ~ 28831323 (+) True G88237
TU110138 lncRNA downstream 127205 28902398 ~ 28902614 (+) True G88248
TU110140 lncRNA downstream 146436 28921629 ~ 28969948 (+) True G88249
TU110198 lncRNA downstream 489634 29264827 ~ 29268282 (+) True AMCG00021772
TU110201 lncRNA downstream 495364 29270557 ~ 29271545 (+) False AMCG00021772
AMCG00021762 mRNA upstream 264056 28510456 ~ 28510815 (+) True AMCG00021762
AMCG00021761 mRNA upstream 264836 28509629 ~ 28510035 (+) True AMCG00021761
AMCG00021763 mRNA upstream 265397 28506377 ~ 28509474 (+) True AMCG00021763
AMCG00021758 mRNA upstream 436351 28317272 ~ 28338520 (+) True AMCG00021758
AMCG00021753 mRNA upstream 561945 28206504 ~ 28212926 (+) True AMCG00021753
AMCG00021759 mRNA downstream 52793 28827986 ~ 28830377 (+) True AMCG00021759
AMCG00021764 mRNA downstream 216397 28991590 ~ 29005897 (+) True AMCG00021764
AMCG00021765 mRNA downstream 232203 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021766 mRNA downstream 250370 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021768 mRNA downstream 300908 29076101 ~ 29095261 (+) True AMCG00021768
TU109668 other upstream 2577795 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3408894 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 4596881 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 7538791 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 7543383 21229852 ~ 21231488 (+) False AMCG00021561
TU110128 other downstream 3122 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 285694 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 603382 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 603382 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 1492209 30267402 ~ 30394221 (+) False AMCG00021803

Expression Profile