RNA id: TU110135


Basic Information

Item Value
RNA id TU110135
length 1067
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G88245
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28830158 ~ 28831224 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAATACTGCCTCGAAACCTATAATATTCTGTAGCACATTGAGATCTTGCCTTTGCCAATATCaccaaatatgaaaataaagagtTGACAATAAggtgtaaatattttatagtgGTCTGCATGCTTTTTTTGTCAGAAAACACAATGTATACAAGATCTGATATTGACATCTGCCAGATTTGTCAGCTTGTGTTGGTATAAAGAGAaggtaattaataaataatacaaataaaaaaggttgCAAGTAAAACCTGTTTGCATTGAAAGGATGAAGAAAATAGAATTTACAAATTCAAGTCATTCaccttttggaaaaaaaaatatatcaagaaagaaaaagagaaaaactattgtgcatttttttgcatttaaaatataaaatataaacatgattCTACACAAAAATACCTggtttctaaaaagaaaaaaatatgcatttcttgACGTTTTGTATTGACATTTACTCGAACAGGAGTTTCCTTACATTCACAATCTGCACCAAATGTGTCACACTCAATATCCTTTCTGAGAATAGACCTAACTAGTTATAAATGGTCAAACAAAATCCAGTTGACCAAGATAATATGCACAAAAATCTCTCTTTGTCTTTAATAACTGGATGGCCAAATATTCATAGGAAATGTCTTCAAATATGCATCATACCGAGCCATATTCATCATAGTCAGGAGGCTGACAACAAGATATTTGGTTTTGGTCTTTAAACTCACTGAAAATCTGCCTcacaattatacttttaaaacacGTGAATTATTTCTTGCCAAGTCAATTAACTACGTATGCCTAAATAACACAGTCCCACGTTTGGTAGTCTTGCCATCTGCTATATCAGACAGTTTCCACTGTTTGCTCCTCTGCTTGTACAGCCTCCTGGACGTACACAATGAACTGGGAGGCATCTTCCCCTTGTGTGTACACCGTGACAGTCTCAATCCCTTCCACATCGTCAGAGGAGACAACGAGGTGATGCTCCTCCCCAAGGCCTACAGAAGCCTGTAATGCCTCTTGAATCATAACTGCGTTATTCCCTTGTTGTTCCTCTTCGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110134 lncRNA downstream 18193 28811763 ~ 28811965 (-) True G88244
TU110133 lncRNA downstream 44497 28785166 ~ 28785661 (-) True G88243
TU110131 lncRNA downstream 50448 28779343 ~ 28779710 (-) True G88241
TU110130 lncRNA downstream 51473 28778293 ~ 28778685 (-) True G88240
TU110118 lncRNA downstream 68186 28761196 ~ 28761972 (-) True G88228
TU110254 lncRNA upstream 448137 29279361 ~ 29280873 (-) True G88347
TU110362 lncRNA upstream 1007294 29838518 ~ 29841539 (-) True G88434
TU110368 lncRNA upstream 1057221 29888445 ~ 29947540 (-) True G88435
TU110503 lncRNA upstream 1594080 30425304 ~ 30425552 (-) True G88545
TU110527 lncRNA upstream 1694522 30525746 ~ 30562800 (-) True G88562
AMCG00021757 mRNA downstream 238356 28586176 ~ 28591802 (-) True AMCG00021757
AMCG00021756 mRNA downstream 591018 28234640 ~ 28239140 (-) True AMCG00021756
AMCG00021755 mRNA downstream 611443 28215822 ~ 28218715 (-) True AMCG00021755
AMCG00021747 mRNA downstream 1189249 27638582 ~ 27640909 (-) True AMCG00021747
AMCG00021744 mRNA downstream 1243019 27584420 ~ 27587139 (-) True AMCG00021744
AMCG00021767 mRNA upstream 212274 29043498 ~ 29047472 (-) True AMCG00021767
AMCG00021771 mRNA upstream 431228 29262452 ~ 29264433 (-) True AMCG00021771
AMCG00021770 mRNA upstream 437190 29268414 ~ 29271589 (-) True AMCG00021770
AMCG00021774 mRNA upstream 441868 29273092 ~ 29275349 (-) True AMCG00021774
AMCG00021773 mRNA upstream 450332 29281556 ~ 29285963 (-) True AMCG00021773
TU110132 other downstream 46877 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 1910314 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 2675783 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 2733374 26091254 ~ 26096784 (-) True AMCG00021700
TU109596 other downstream 2922153 25905444 ~ 25908005 (-) True G87806
TU110186 other upstream 237977 29069201 ~ 29071760 (-) True G88288
TU110330 other upstream 898853 29730077 ~ 29742808 (-) True G88405
TU110482 other upstream 1506359 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 2046624 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 2298359 31129583 ~ 31132185 (-) False AMCG00021830

Expression Profile