RNA id: TU110138


Basic Information

Item Value
RNA id TU110138
length 217
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G88248
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28902398 ~ 28902614 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggcctccatcatccgtaaatggaagaagtttggaaccactaggactcttcctagagctggccgcccggccaaactgagcgatcaggggagaagggccttagtcagggaggtgaccaagaacccgatggtcactctgacagagctccagcgtgtctctgtggagagaggagaaccttccagaagaacaaccatctctgcagcactccaccaatcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110127 lncRNA upstream 71075 28830906 ~ 28831323 (+) True G88237
TU110122 lncRNA upstream 127205 28774871 ~ 28775193 (+) True G88232
TU110115 lncRNA upstream 204313 28697878 ~ 28698085 (+) True G88225
TU110035 lncRNA upstream 920271 27888558 ~ 27982127 (+) True G88161
TU110028 lncRNA upstream 1265642 27632915 ~ 27636756 (+) False AMCG00021745
TU110140 lncRNA downstream 19015 28921629 ~ 28969948 (+) True G88249
TU110198 lncRNA downstream 362213 29264827 ~ 29268282 (+) True AMCG00021772
TU110201 lncRNA downstream 367943 29270557 ~ 29271545 (+) False AMCG00021772
TU110206 lncRNA downstream 376563 29279177 ~ 29280833 (+) True G88306
TU110207 lncRNA downstream 395223 29297837 ~ 29298080 (+) True G88307
AMCG00021759 mRNA upstream 72021 28827986 ~ 28830377 (+) True AMCG00021759
AMCG00021760 mRNA upstream 98222 28767415 ~ 28804176 (+) True AMCG00021760
AMCG00021762 mRNA upstream 391583 28510456 ~ 28510815 (+) True AMCG00021762
AMCG00021761 mRNA upstream 392363 28509629 ~ 28510035 (+) True AMCG00021761
AMCG00021763 mRNA upstream 392924 28506377 ~ 28509474 (+) True AMCG00021763
AMCG00021764 mRNA downstream 88976 28991590 ~ 29005897 (+) True AMCG00021764
AMCG00021765 mRNA downstream 104782 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021766 mRNA downstream 122949 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021768 mRNA downstream 173487 29076101 ~ 29095261 (+) True AMCG00021768
AMCG00021769 mRNA downstream 307663 29210277 ~ 29223312 (+) True AMCG00021769
TU110128 other upstream 123665 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 2705322 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3536421 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 4724408 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 7666318 21235070 ~ 21236080 (+) True G86861
TU110172 other downstream 158273 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 475961 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 475961 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 1364788 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1486223 30388837 ~ 30394221 (+) False AMCG00021803

Expression Profile