RNA id: TU110140


Basic Information

Item Value
RNA id TU110140
length 440
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G88249
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28921629 ~ 28969948 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatggttgttggtgccagacgggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtttacaaagaatggtgtgaaaatggaaaaacatccagtatgcggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagctgatagaagagcaactttgactgaaataaccactcgttacaaccgaggtTAGCAGCAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110138 lncRNA upstream 19015 28902398 ~ 28902614 (+) True G88248
TU110127 lncRNA upstream 90306 28830906 ~ 28831323 (+) True G88237
TU110122 lncRNA upstream 146436 28774871 ~ 28775193 (+) True G88232
TU110115 lncRNA upstream 223544 28697878 ~ 28698085 (+) True G88225
TU110035 lncRNA upstream 939502 27888558 ~ 27982127 (+) True G88161
TU110198 lncRNA downstream 294879 29264827 ~ 29268282 (+) True AMCG00021772
TU110201 lncRNA downstream 300609 29270557 ~ 29271545 (+) False AMCG00021772
TU110206 lncRNA downstream 309229 29279177 ~ 29280833 (+) True G88306
TU110207 lncRNA downstream 327889 29297837 ~ 29298080 (+) True G88307
TU110209 lncRNA downstream 337931 29307879 ~ 29315559 (+) True G88308
AMCG00021759 mRNA upstream 91252 28827986 ~ 28830377 (+) True AMCG00021759
AMCG00021760 mRNA upstream 117453 28767415 ~ 28804176 (+) True AMCG00021760
AMCG00021762 mRNA upstream 410814 28510456 ~ 28510815 (+) True AMCG00021762
AMCG00021761 mRNA upstream 411594 28509629 ~ 28510035 (+) True AMCG00021761
AMCG00021763 mRNA upstream 412155 28506377 ~ 28509474 (+) True AMCG00021763
AMCG00021764 mRNA downstream 21642 28991590 ~ 29005897 (+) True AMCG00021764
AMCG00021765 mRNA downstream 37448 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021766 mRNA downstream 55615 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021768 mRNA downstream 106153 29076101 ~ 29095261 (+) True AMCG00021768
AMCG00021769 mRNA downstream 240329 29210277 ~ 29223312 (+) True AMCG00021769
TU110128 other upstream 142896 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 2724553 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3555652 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 4743639 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 7685549 21235070 ~ 21236080 (+) True G86861
TU110172 other downstream 90939 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 408627 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 408627 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 1297454 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1418889 30388837 ~ 30394221 (+) False AMCG00021803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009739 False 5182 mRNA 0.43 12 NC_007123.7 46742805 ~ 46766300 (+)