RNA id: TU110172


Basic Information

Item Value
RNA id TU110172
length 751
RNA type TUCP
GC content 0.58
exon number 3
gene id G88276
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29060887 ~ 29065339 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGCGAACCTGAGCCCTCGGCTGATCCGCTCCTGCTCTCTGGTTGCCACTTCTCACTTTCGCGTCTGCGGTCTCTTTAAATTGAAGCGATCCGCCGCGATTACCCGTCCATTTACCGTGCAGCCTCGGCGGGGTTTGGCTGCACCTTGTTCGCCGGCGCTTGTGTAAAGTTTAAAGGGATCTGGGGTGCGAGACGGATGGAGGACCCGGCGGACTCTGGTGGCGGCACTGCGGGCCCCTCGAAGCGAGTGACGGAGATCCGATGCCCGGCGGGGACTCGTCCCCTGCGGCTGCTGGAATGGAAAGTAAAGCCCGGATCGCACGTAAATATCGACTCGGTCCTGGCGCTGTGTGCTCCCATCCCGGCGGAGAGGCAGGCCGGAGTAGAGCACCGAGAAGCCCCGACCCGACTAGCGGAGAAGAAGATGAAGTCGGACCGGGCCGGAGTCGTGAGGGAGCTGTGCTGTCAGCCCGGGCAGGTCGTCTCTCCGGGGGGATTACTAGTCCGAATTGAAGAATGTACCCATCCCGTTGTCATGAAGGGGCTATGTGCGGAGTGTGGCCAGGACCTGACACAATTACAGAACAAAAATGGGAAACAGCAAGCCCCTATATCCACTGCCAATGTCTCAATGGTCCACAGTGTCCCAGAGCTAATGGTCAGCTCAGAGGTAAGGCCTTCTCTGCAGAGTTCTGGGCATCTGGAGACTCGTTTCACACAACTCATGAAACCTGCTAACACAAACCAAGT

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0050780 dopamine receptor binding molecular_function
GO:0031752 D5 dopamine receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110140 lncRNA upstream 90939 28921629 ~ 28969948 (+) True G88249
TU110138 lncRNA upstream 158273 28902398 ~ 28902614 (+) True G88248
TU110127 lncRNA upstream 229564 28830906 ~ 28831323 (+) True G88237
TU110122 lncRNA upstream 285694 28774871 ~ 28775193 (+) True G88232
TU110115 lncRNA upstream 362802 28697878 ~ 28698085 (+) True G88225
TU110198 lncRNA downstream 199488 29264827 ~ 29268282 (+) True AMCG00021772
TU110201 lncRNA downstream 205218 29270557 ~ 29271545 (+) False AMCG00021772
TU110206 lncRNA downstream 213838 29279177 ~ 29280833 (+) True G88306
TU110207 lncRNA downstream 232498 29297837 ~ 29298080 (+) True G88307
TU110209 lncRNA downstream 242540 29307879 ~ 29315559 (+) True G88308
AMCG00021766 mRNA upstream 18946 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021765 mRNA upstream 39146 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021764 mRNA upstream 54990 28991590 ~ 29005897 (+) True AMCG00021764
AMCG00021759 mRNA upstream 230510 28827986 ~ 28830377 (+) True AMCG00021759
AMCG00021760 mRNA upstream 256711 28767415 ~ 28804176 (+) True AMCG00021760
AMCG00021768 mRNA downstream 10762 29076101 ~ 29095261 (+) True AMCG00021768
AMCG00021769 mRNA downstream 144938 29210277 ~ 29223312 (+) True AMCG00021769
AMCG00021772 mRNA downstream 201099 29266438 ~ 29275347 (+) False AMCG00021772
AMCG00021779 mRNA downstream 316746 29382085 ~ 29385323 (+) False AMCG00021779
AMCG00021781 mRNA downstream 540801 29606140 ~ 29648683 (+) True AMCG00021781
TU110128 other upstream 282154 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 2863811 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3694910 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 4882897 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 7824807 21235070 ~ 21236080 (+) True G86861
TU110265 other downstream 313236 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 313236 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 1202063 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1323498 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 5861214 34926553 ~ 35041288 (+) False AMCG00021881

Expression Profile