RNA id: TU110206


Basic Information

Item Value
RNA id TU110206
length 1657
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G88306
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29279177 ~ 29280833 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatttttattttttatatataattgcaaCACAATGCTATGAATGAGACTGacacaaacataattttaaacattgagACGTAAACCAGAAATTATCCATGTTCTGATTTCAGTGTGCAACATTGAAGTTTACCATAGAAACTGGTCTTCAAATGATCAGCTTAttagaatatataatatatatataaaaaaatcctaAACAAATTACTTTACAAGTACAAACTAGTACTATAAAAGGCAAAAGAGAAAGAATAACGCTGACCTAAAATTTCTCACATTTCAATCTCTACGAATGAACAGTTCTTCCAAAGGGAAATGGAGGGTTATTAAACATGGGGTTCCtggaacagtttatttttttaaactttaataagaGCGGCAacatatgctttttaaaaatcaaattaactTTCACTATCTATAAACTAGGGTgtaatttacttaaatattaTGGTACTACAATTAATACCATATCAGTTTCtaataactgcatttaaaaaaaaaaaaaaaaaaaagactgtgcATTCTTAAAGcaacatgtattttcttaaacacTGCAATATACATGGACcaaaaaaccaaaccaaaagacAACACATAAGCGATAAGGCCTTCATGGTTGGGGAGGGGACAAGGGGAAGATGTGGCACAGATGCATCTAAAGGCAGCATGCTTTTTCCTCTGCTCTCTCCAAGACTACTGTGGGATTTCAAACctacaaaactattttttggTCAAAGAATGCTGAGGAAGTTGCAGAGATGATGTCACAACAAACAGTTGAGAAGTTTGAGagggtaattaaaaaaaaaaaacttggagCAACCAATTGACGTTGTTCAGCTGACTTCAGGTCACTTTTCCCTCTCAACCCGATGCATTTACACCATATACAGGTGTAAAGTGGTACTGTAGGGCACCATTTAAAAAGCAGCACCTACTGCCCCCTAGTGAAAATCCTCTTAATATATTTGAGCTTTTAGATCCCAGAcacagagtaaaataaaatgactacacagagtgataaacatttgaaatagaCAATTATTCAACAAAAGGACTGACATTTGGCTTTGGTCCACTAGTGTAATGTGTAATGCATCTTATATTCAAACCCACTCATGCTACATGTAAAtgaattaacattaaaaagcacTGGAATTGAAACTGGGTTTTAAAGATGCTGAAAAAGACAGCAGTGATTTCAAGCTTTCTCCATTGAAGATCTAATGACAGGGAAGACCTGctaaataaagtttacaaatattGAACACACAGAGACTTCTGGAAAGggaatttaaaaatgcttccccccacacacatttctTTACCCTACTGTATTACAAGTTCCAATGTAGTTTGAATCCAGGATAAAGCATCATTATAACTAATACTGCTTTTAAGAAGCAAATAGgtaaaatgacaacaaataaaaacttttctATACTGAaaagtgttttagttttgttttttttaaagtcactgCAGAcctttattacatatattaacaGCAGCGATGGTGCCATCACTTAGGATAAATGTGCACATGATTCCAAAAGtcttattaattgtattgttactATAATTACACAAGACTGAAAATAGTTGCTTAAATAAATCATAGGgcattttagtttcatttctcaaattaaataaaaa

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110201 lncRNA upstream 7632 29270557 ~ 29271545 (+) False AMCG00021772
TU110198 lncRNA upstream 10895 29264827 ~ 29268282 (+) True AMCG00021772
TU110140 lncRNA upstream 309229 28921629 ~ 28969948 (+) True G88249
TU110138 lncRNA upstream 376563 28902398 ~ 28902614 (+) True G88248
TU110127 lncRNA upstream 447854 28830906 ~ 28831323 (+) True G88237
TU110207 lncRNA downstream 17004 29297837 ~ 29298080 (+) True G88307
TU110209 lncRNA downstream 27046 29307879 ~ 29315559 (+) True G88308
TU110262 lncRNA downstream 95688 29376521 ~ 29388601 (+) True G88352
TU110266 lncRNA downstream 97742 29378575 ~ 29382273 (+) True AMCG00021779
TU110269 lncRNA downstream 103037 29383870 ~ 29385325 (+) False AMCG00021779
AMCG00021772 mRNA upstream 3830 29266438 ~ 29275347 (+) False AMCG00021772
AMCG00021769 mRNA upstream 55865 29210277 ~ 29223312 (+) True AMCG00021769
AMCG00021768 mRNA upstream 183916 29076101 ~ 29095261 (+) True AMCG00021768
AMCG00021766 mRNA upstream 237236 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021765 mRNA upstream 257436 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021779 mRNA downstream 101252 29382085 ~ 29385323 (+) False AMCG00021779
AMCG00021781 mRNA downstream 325307 29606140 ~ 29648683 (+) True AMCG00021781
AMCG00021782 mRNA downstream 472578 29753411 ~ 29782570 (+) True AMCG00021782
AMCG00021784 mRNA downstream 507901 29788734 ~ 29804747 (+) True AMCG00021784
AMCG00021785 mRNA downstream 534657 29815490 ~ 29830397 (+) True AMCG00021785
TU110172 other upstream 213838 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 500444 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 3082101 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3913200 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 5101187 24174509 ~ 24177990 (+) True AMCG00021656
TU110265 other downstream 97742 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 97742 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 986569 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1108004 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 5645720 34926553 ~ 35041288 (+) False AMCG00021881

Expression Profile