RNA id: TU110207


Basic Information

Item Value
RNA id TU110207
length 244
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G88307
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29297837 ~ 29298080 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCTGgaagagggagctctcgcctcCGCCGTCTGCTCTGCCTCCTCGCAAAGCACAAACCACACGCGTCGCTCCGGTGTCACTGCAGCTCAGGAACAAACCGCTGCTCTGGGAACAACGACGGGCCCTGCTGCTCCTCACAACATCCACGCACTCGCTAATGGCAATAAATAATACGGACTTATTTCGTTTATTCGCCACTGAGGTTTTTTGTGCCGCATCACCCTCCTCCTGAAAGGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110206 lncRNA upstream 17004 29279177 ~ 29280833 (+) True G88306
TU110201 lncRNA upstream 26292 29270557 ~ 29271545 (+) False AMCG00021772
TU110198 lncRNA upstream 29555 29264827 ~ 29268282 (+) True AMCG00021772
TU110140 lncRNA upstream 327889 28921629 ~ 28969948 (+) True G88249
TU110138 lncRNA upstream 395223 28902398 ~ 28902614 (+) True G88248
TU110209 lncRNA downstream 9799 29307879 ~ 29315559 (+) True G88308
TU110262 lncRNA downstream 78441 29376521 ~ 29388601 (+) True G88352
TU110266 lncRNA downstream 80495 29378575 ~ 29382273 (+) True AMCG00021779
TU110269 lncRNA downstream 85790 29383870 ~ 29385325 (+) False AMCG00021779
TU110328 lncRNA downstream 427079 29725159 ~ 29725962 (+) True G88403
AMCG00021772 mRNA upstream 22490 29266438 ~ 29275347 (+) False AMCG00021772
AMCG00021769 mRNA upstream 74525 29210277 ~ 29223312 (+) True AMCG00021769
AMCG00021768 mRNA upstream 202576 29076101 ~ 29095261 (+) True AMCG00021768
AMCG00021766 mRNA upstream 255896 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021765 mRNA upstream 276096 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021779 mRNA downstream 84005 29382085 ~ 29385323 (+) False AMCG00021779
AMCG00021781 mRNA downstream 308060 29606140 ~ 29648683 (+) True AMCG00021781
AMCG00021782 mRNA downstream 455331 29753411 ~ 29782570 (+) True AMCG00021782
AMCG00021784 mRNA downstream 490654 29788734 ~ 29804747 (+) True AMCG00021784
AMCG00021785 mRNA downstream 517410 29815490 ~ 29830397 (+) True AMCG00021785
TU110172 other upstream 232498 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 519104 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 3100761 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3931860 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 5119847 24174509 ~ 24177990 (+) True AMCG00021656
TU110265 other downstream 80495 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 80495 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 969322 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1090757 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 5628473 34926553 ~ 35041288 (+) False AMCG00021881

Expression Profile