RNA id: TU110262



Basic Information


Item Value
RNA id TU110262
length 550
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G88352
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29376521 ~ 29388601 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgattattacatatttattagtGTCATCTTCATTAATACTCTCCTAGTACATAgtgaattgcttaattaatcTTGAACAGAAGAATTGTTTGAGTTGTAAATATTGAGTAGATCACCCTCTAGTGGAACAAATTGTTAATGCATACATTCAACCTGGCACAACATTCAATTTACTCCACAGGAATTTGGattgttcattgttcattgGGGGTAACgctacaaaacaaacatcacaggAAGTCAGTTTAAAGTTGTGAAATTGAATGAAGAaatgaattgtgttttaaagcCCAATTTGACATGCATCAAACATTTAGAAGACAACACCCAGGGGCCCCATGCGATTCCAGGGGATCCTGTGCACTGTAAAGTTCCCCCGTCTTCACAGTCCACAAGTCAGGGTCTCACTTCATCGGGGGGCGGGCTGCCATTGAGAACAGCCAGGGTGTTAGTCACCATCCTCTCGACCATCTTCTGGCTTGTCTGGTACGTGTTGGTTCCCAAATGAGGCAACACAATGACGTTCTTAAGACTGAGCAATGGGTGATCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110209 lncRNA upstream 60962 29307879 ~ 29315559 (+) True G88308
TU110207 lncRNA upstream 78441 29297837 ~ 29298080 (+) True G88307
TU110206 lncRNA upstream 95688 29279177 ~ 29280833 (+) True G88306
TU110201 lncRNA upstream 104976 29270557 ~ 29271545 (+) False AMCG00021772
TU110198 lncRNA upstream 108239 29264827 ~ 29268282 (+) True AMCG00021772
TU110328 lncRNA downstream 336558 29725159 ~ 29725962 (+) True G88403
TU110374 lncRNA downstream 586440 29975041 ~ 29978559 (+) True G88440
TU110389 lncRNA downstream 658527 30047128 ~ 30048888 (+) True G88450
TU110396 lncRNA downstream 748937 30137538 ~ 30139284 (+) True G88454
TU110394 lncRNA downstream 753594 30142195 ~ 30219496 (+) True G88452
AMCG00021772 mRNA upstream 101174 29266438 ~ 29275347 (+) False AMCG00021772
AMCG00021769 mRNA upstream 153209 29210277 ~ 29223312 (+) True AMCG00021769
AMCG00021768 mRNA upstream 281260 29076101 ~ 29095261 (+) True AMCG00021768
AMCG00021766 mRNA upstream 334580 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021765 mRNA upstream 354780 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021781 mRNA downstream 217539 29606140 ~ 29648683 (+) True AMCG00021781
AMCG00021782 mRNA downstream 364810 29753411 ~ 29782570 (+) True AMCG00021782
AMCG00021784 mRNA downstream 400133 29788734 ~ 29804747 (+) True AMCG00021784
AMCG00021785 mRNA downstream 426889 29815490 ~ 29830397 (+) True AMCG00021785
AMCG00021790 mRNA downstream 688771 30077372 ~ 30091490 (+) True AMCG00021790
TU110172 other upstream 311182 29060887 ~ 29065339 (+) True G88276
TU110128 other upstream 597788 28778315 ~ 28778733 (+) True G88238
TU109668 other upstream 3179445 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 4010544 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 5198531 24174509 ~ 24177990 (+) True AMCG00021656
TU110433 other downstream 878801 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1000236 30388837 ~ 30394221 (+) False AMCG00021803
TU111156 other downstream 5537952 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 5649238 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 5822532 35211133 ~ 35263537 (+) True G89142

Expression Profile