RNA id: TU110330


Basic Information

Item Value
RNA id TU110330
length 384
RNA type TUCP
GC content 0.52
exon number 4
gene id G88405
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29730077 ~ 29742808 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCCGGGCCAGTACGGACTCGCAACATGGACCCGTGATGTGGAGTCTGAAACGGGACAAGCTGAGAGACACGGCTTCGGTACCAGAAGTGGAGGAACTGTCATGACCATTCAGACATAACaaaaccagcacacacacactgaaccaACCCTGAAGATGTTTGAGAATTTCAGGGAGAGGTTACAGACCGTGCAGCAGGACTTCACGACGGGGATCAAGACACTGAGTGACAAGTCGAAGGAAGCAAAAGGCATGAAGAAGCAGAGgaGAGTGGATCATCTGCCACAGTTTTCTGCAGGTGTGGAGCTTCTAAACcgATATGAAGAGACCTGGGTGACCCTACACAAGCGAGCCAAGGATTATGCTAAAGCTGGCGAGGTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110254 lncRNA downstream 449204 29279361 ~ 29280873 (-) True G88347
TU110135 lncRNA downstream 898853 28830158 ~ 28831224 (-) True G88245
TU110134 lncRNA downstream 918112 28811763 ~ 28811965 (-) True G88244
TU110133 lncRNA downstream 944416 28785166 ~ 28785661 (-) True G88243
TU110131 lncRNA downstream 950367 28779343 ~ 28779710 (-) True G88241
TU110362 lncRNA upstream 95710 29838518 ~ 29841539 (-) True G88434
TU110368 lncRNA upstream 145637 29888445 ~ 29947540 (-) True G88435
TU110503 lncRNA upstream 682496 30425304 ~ 30425552 (-) True G88545
TU110527 lncRNA upstream 782938 30525746 ~ 30562800 (-) True G88562
TU110628 lncRNA upstream 1218895 30961703 ~ 30962096 (-) True G88643
AMCG00021783 mRNA downstream 67190 29648775 ~ 29662887 (-) True AMCG00021783
AMCG00021780 mRNA downstream 327372 29386827 ~ 29402705 (-) True AMCG00021780
AMCG00021778 mRNA downstream 355408 29365896 ~ 29374669 (-) True AMCG00021778
AMCG00021777 mRNA downstream 397932 29327998 ~ 29332145 (-) True AMCG00021777
AMCG00021776 mRNA downstream 408446 29318323 ~ 29321631 (-) True AMCG00021776
AMCG00021787 mRNA upstream 99556 29842364 ~ 29846378 (-) True AMCG00021787
AMCG00021786 mRNA upstream 232178 29974986 ~ 29986193 (-) True AMCG00021786
AMCG00021789 mRNA upstream 300071 30042879 ~ 30045102 (-) True AMCG00021789
AMCG00021788 mRNA upstream 304522 30047330 ~ 30048871 (-) True AMCG00021788
AMCG00021793 mRNA upstream 399414 30142222 ~ 30158707 (-) True AMCG00021793
TU110186 other downstream 658317 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 946796 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 2810233 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 3575702 26152105 ~ 26154375 (-) True G87871
TU109647 other downstream 3633293 26091254 ~ 26096784 (-) True AMCG00021700
TU110482 other upstream 594775 30337583 ~ 30424612 (-) True G88527
TU110615 other upstream 1135040 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 1386775 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 2320577 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 4604180 34346988 ~ 34380295 (-) False G89004

Expression Profile