RNA id: TU110482


Basic Information

Item Value
RNA id TU110482
length 971
RNA type TUCP
GC content 0.43
exon number 3
gene id G88527
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30337583 ~ 30424612 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttaatttatagAAAAGAAAGTAGATTCCTACTCTAAGTGAAAGGTCTACTCTAACTACTAATAGATGGGACTAATACAAACTTAAGTCATGTTTCGCGGTTTGTGAGAAGGTGCGAGTGGGGAAGGGGGGTTCATtcgcatttatttatttttaatttgatttaagaGATCATACTGATACTGAAGGAGAACAGAGCTAGTTATGCCAAAATACACGAAACAAATCCAGCCACTCAGTTTCACAGAAGGGTCCAAATAAACGAGTTtaaccaaaaggaaaaaaaaaaaaaaatcaaattaagatGCGGTATATTCCTACACACAATGCAATTGACAAGAACCGAAAGGAGGCGATCAAACCCATGCCGACACAATCGCTacgaaatataaaaacaaacaaacaaaaaaaaaagtacacttATGTTCGTCTTCTCCCAGCCTCGTCCATGGCTGGTGCTATTGGATTTGATTTCTCTCCAGAGACTACTTTTATGAACGCGTTATTAGAGGATGGGGAGTACAGAGGACCGAGGCAGGGAAAGGCAGATGCCGGGAGAGGATGGCCCCAGACGAAAGGgaaaaagacagagaagacaTGTCGGAGTTCACTGGCAATAGCACTGGCCCAGCAACTGTGTTCATAATGATGGCGTTTTCAAAGAGCCCGAGAGACGACAGACACGACCACTACATCTTATCCAGTGTGACGAGGCGTAATCGCGGCCTGCCAGTAAAAGGTGCGCTGCGTTTCCCTTTACATTCTCCGAGCGGTGCAGTGCTTCAGCTGAGGTTCAACTGCGCATTAGGCCATTTTTAAACCGCTTTCTAACGTGTCGCCATGCTTATACGCTTCACGCACCTACACGTCTTCCTTAGATCACCATCGCAAAAGTGATTCGACTATTTGTGTGATCTGACTTCGTAATAAATAGTTTTacttggttttcttttgttgtctgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110368 lncRNA downstream 390043 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 496044 29838518 ~ 29841539 (-) True G88434
TU110254 lncRNA downstream 1056710 29279361 ~ 29280873 (-) True G88347
TU110135 lncRNA downstream 1506359 28830158 ~ 28831224 (-) True G88245
TU110134 lncRNA downstream 1525618 28811763 ~ 28811965 (-) True G88244
TU110503 lncRNA upstream 692 30425304 ~ 30425552 (-) True G88545
TU110527 lncRNA upstream 101134 30525746 ~ 30562800 (-) True G88562
TU110628 lncRNA upstream 537091 30961703 ~ 30962096 (-) True G88643
TU110741 lncRNA upstream 1374140 31798752 ~ 31836239 (-) True G88736
TU110747 lncRNA upstream 1434797 31859409 ~ 31859833 (-) True G88742
AMCG00021797 mRNA downstream 52447 30284672 ~ 30285136 (-) True AMCG00021797
AMCG00021796 mRNA downstream 72129 30256031 ~ 30265454 (-) True AMCG00021796
AMCG00021793 mRNA downstream 178876 30142222 ~ 30158707 (-) True AMCG00021793
AMCG00021788 mRNA downstream 288712 30047330 ~ 30048871 (-) True AMCG00021788
AMCG00021789 mRNA downstream 292481 30042879 ~ 30045102 (-) True AMCG00021789
AMCG00021808 mRNA upstream 1504 30426116 ~ 30428501 (-) True AMCG00021808
AMCG00021807 mRNA upstream 9315 30433927 ~ 30444924 (-) True AMCG00021807
AMCG00021806 mRNA upstream 37399 30462011 ~ 30469642 (-) True AMCG00021806
AMCG00021809 mRNA upstream 94389 30519001 ~ 30519513 (-) True AMCG00021809
AMCG00021817 mRNA upstream 274737 30699349 ~ 30707723 (-) True AMCG00021817
TU110330 other downstream 594775 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 1265823 29069201 ~ 29071760 (-) True G88288
TU110132 other downstream 1554302 28781802 ~ 28783281 (-) True G88242
TU109843 other downstream 3417739 26911474 ~ 26919844 (-) False AMCG00021723
TU109676 other downstream 4183208 26152105 ~ 26154375 (-) True G87871
TU110615 other upstream 453236 30877848 ~ 30888212 (-) True AMCG00021820
TU110664 other upstream 704971 31129583 ~ 31132185 (-) False AMCG00021830
TU110795 other upstream 1638773 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 3922376 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 3922376 34346988 ~ 34351125 (-) True G89004

Expression Profile