RNA id: TU110661


Basic Information

Item Value
RNA id TU110661
length 1531
lncRNA type intronic
GC content 0.40
exon number 2
gene id G88666
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31130347 ~ 31132235 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATCTTGACTGCAGAAAATAGCTTACCGGCTTCCCTTCTGAAATAGTGCTTAGTCTTTACATGATGGAGCATAATCTGGTTCTATATTGTAAGATGCATATTGTACACGAGACTGAAGTGAGTAATTAACATAGCAATCGGCTCAAGCAACCACACCATTTTACGATAACCCCTTATATCGACATTACTGCATATATTAGATAAAATACCTCGTCCTTTCGGTGTGATTTCTGCAACCAAGTCTTCCACCGTCACATGATCCAACCCTTTTTCCCGGATCacatctgcaaaataataacatcTCTCAGCGGTGTGCAAAGCCTGGTCCTGCAGGGCtgcaatgcatttgttttgttgttgcaccCCAAGTTATCAAATTAAAAGAATTTCAATGCCTTGCTCACATCTCAGGTCATAGGCAGTGCCAGAGATCTGTAAAATCATCAGAATTTGGCTATGTACTGCAGTTCAATTAGccaatttaatatcaggtgaCCATGTTAACTCGCTTTTGATGATATTATTTGACTTTCTGCTACAATTAGATTGCTGCACAGAACAATGATTTAAGTCTTGTCGTATTTTCTGGAAGGGGTATAGAATGGCATTAACAGTGGTATTTGACAACTAAAAGTGAAGAACATCGATTATTCAACACCAGTGAAGGAAATTATGGAAATGGACTGACCTGTGGACAGAGGATATGCATTATGCACATAATCACATTTTCTGGGTTTATCTGCTGGTCCCAGTTTGCAGACGTCTCGCTAATTCAATCACCTAATGAACTCACCTTTGCAGTGCGCTTTTAACTGGTCCTTCCATCCGCATTCAATAAGTTTGGCTCGGAGCAACTCCTTCAATCTGTGTAATATGAAATCATAAAGCAGTCAGCTCATTGCATATTCATGAACAGTTTCCTAATAGCTGCTAGGCGAGGAATAAGGCTATATGCACATACAGCATTGCAAGAAACAGTTTTCCTCACCGCTCTCGTTCACCCATTTCTATTAGTTTCTGGTTTATTGTTGCTCTCATTTGCGCGTCTTTACTCATGTTCTTCACTCTGTAACTTTGAATCCAGTAAATGGACAGACTAACAGTCTTCCTTTGTTCGTGAGTGTGTCAACAAACCGACCGCATTATCTACGACAGTAAAAGTTGGATTTCAAACATTTGTAAGAAAGCACAATCATCAAGTCAGATATAAACGGCGGGTTAAGTCACAGGCAtgaaatcatttgttttctttcactacTTCGCAGAAAGGCATTTTTCGTTTCAAACATATTATACATGCATCGTTTCAGTGACAGCATTCACTCATTTTAACTTCGAAagcaaacatattaaaaataactcaCCAAAAACCACTGAGGTTTAATTGATGTTACATgcaatgttttgtgtttcttttttacttcGCTCCCTGGGAAACAACTCCCAGTAACACGCCGTACCGACACTGCTGAGATTCCGGCGCACAACAATATTGACTGAGGAATATAGGTTCCGCTTTCGTCAGCATTG

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110644 lncRNA upstream 81818 31047803 ~ 31048529 (+) True G88655
TU110586 lncRNA upstream 399479 30727284 ~ 30730868 (+) True G88609
TU110466 lncRNA upstream 661427 30466903 ~ 30468920 (+) False AMCG00021802
TU110430 lncRNA upstream 872150 30256024 ~ 30258197 (+) True G88485
TU110394 lncRNA upstream 910851 30142195 ~ 30219496 (+) True G88452
TU110674 lncRNA downstream 82074 31214309 ~ 31214669 (+) True G88677
TU110746 lncRNA downstream 726600 31858835 ~ 31859037 (+) True G88741
TU110748 lncRNA downstream 727686 31859921 ~ 31860135 (+) True G88743
TU110752 lncRNA downstream 762232 31894467 ~ 31986530 (+) True G88746
TU110767 lncRNA downstream 856549 31988784 ~ 31989051 (+) True G88761
AMCG00021821 mRNA upstream 91275 31028446 ~ 31039072 (+) True AMCG00021821
AMCG00021822 mRNA upstream 252507 30863262 ~ 30877840 (+) True AMCG00021822
AMCG00021824 mRNA upstream 332358 30797240 ~ 30797989 (+) True AMCG00021824
AMCG00021814 mRNA upstream 377083 30744604 ~ 30753264 (+) True AMCG00021814
AMCG00021815 mRNA upstream 430983 30679836 ~ 30699364 (+) True AMCG00021815
AMCG00021832 mRNA downstream 121959 31254194 ~ 31255057 (+) True AMCG00021832
AMCG00021833 mRNA downstream 237863 31370098 ~ 31404802 (+) True AMCG00021833
AMCG00021835 mRNA downstream 287271 31419506 ~ 31445655 (+) True AMCG00021835
AMCG00021839 mRNA downstream 450806 31583041 ~ 31584257 (+) True AMCG00021839
AMCG00021836 mRNA downstream 502935 31635170 ~ 31652999 (+) True AMCG00021836
TU110433 other upstream 736126 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 736126 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 1748074 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 1748074 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 2065008 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 3794318 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 3905604 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 4078898 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 4832336 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 4832336 35964571 ~ 35967384 (+) True G89299

Expression Profile