RNA id: TU110741


Basic Information

Item Value
RNA id TU110741
length 2501
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G88736
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31798752 ~ 31836239 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTTCAAACTGAGTTCTTGAGCTGAATCCTTGAGGAAAAGACACAGTGACTTTTAGTTGAGGTGAGCCAATCCATACtattccacatttaatttattccacTACACATCTTAAGATACGTTTTATAAAAAGTATACAGAAAAAAGAAGCACTACattgcttaatttattaaactaaaaaggggaaaaaaggacaAAGCACTAATATGTATGCAACTTTTCACTGAGAAGCCAGTGCAGATGCTTTGGGAGGCcttgtatttcaaatacaaaatgaacacagattaaaaaaataataagagcaTATGCAAGAGCACCACATACATCATTTACTGGTATGTCTGAATCATTTTACTTACTTTTAATCAACAAAATaggtttgttgttttacaagtcatacattacaatattaaaacagatcACTTGTCTGAAtagataaatgtttattttgacaaatgtgATGTACTGAAATTAACATAGTAAGGCTCACCTGATGTGACACATTAgacttgtattgtattttttttttttaaacccacagATTCACAAAAGCATTACATTCATTCATAGGCACCCTGCAGCAGAGTTTGACATAAAATTGTGCAGCCTAAGAAGGCTTTGTTTGCATGCCAggttaatataaaacatcatAACCTAATAGAAATCATGCTGTAATGTCTCTCATggcaaaaatatacattttcaagttaATTTAAAGGAATGTGTAATGGTTCTTTTGTtatgcttttcatttattttattttattgagtaATGAGGAGAAAGTGCTTGAATTCTTTTCTCATTACACATTCTATAAATATTCTTGCAGATTATCCTTATGTTATACAGTATCTTCTTCCCAGAATCATGTCAACTTAGATGGGCCCTTTCAATCCGTCTACAGAATGTATGCCTGTCTGGCTTGAGTTTGATTGATATGGACATCTATTGACAAAACTGTTGATACGATTCAAAGACGAATGCTGTTGGCAAGATTAGGGAGGACCAAAGGAAGATTGCAGTTTGTATCCTGCCGAGCCGAAACACTTTTTGTGGAACCCGATCAATGTGGCATCTCAGATGATATCATCTTTCTGCGCCTTTATCTTTCCCAAGTTAACTTTCACTGCCTGCACCATTCATTAAGAGCACTGAATATCTTTCGGGTATATCTCATGCTTCAGCTGCTGctataagaaagaaagaaagccacTGAACAGTATCCATAAAGGTCTGGGATTTAAGAGTCAGAATAATTTTGCTTCCAATACCGACTCTTAAACAGCCAATGAGAGAAAATGGAATTGGACCCCCTGAAATCACATTTTGATACAGCTGCTGCTCAGAACAAGACCATGTTTctaatattcatatatttgaatttgCTGTATGAATCTctttcaatttccatttttatatacacttacatacataataatacctttttaaatgtacaataaactACTACTTTTCTTTTCGCTTGCAtttctttaacttttaaaatgcattgtgttgaTCAATATCCCTTTAGACATTTAGCATTAGCatagttcatgttttttttaggaTGCAcctaaataaactatttaaagtGCTAAACTCTTGTAGTCATGACCAGAAACATTCATGATAGACTGGTAGAAACAAGTGAAACAAATGTGTCAACATCTCAAGCATTAAATGTAATCCAATGTGATTTTAGATGAACATCTGACTGATCTATAACTGATTTTATGACTTATTGTAACTTATTATTtctacacatacagtatatagtaACACTAGCAAATAATACCTTTAGAAAAACAgtcaatatataataaatactttttaactGACATTTCCTATTTCTTATTCTTATAGATATTCATGTGTACTGTGCTAAAATGGTATTTGAAATCTAAAAATAGTAACAAGCAGCAAGAAGAGATAAGTGGAGTATTGTAGTAGTCTTACCCCATAAATAGAGCCAAATTACCTCAACGTTCATGGCACATTGCACATTCATTTGAATCATATGAATACAATGATGTGATCTGAGGCGCTTTTCTCCGCAGTAATACAGATTTACCAGTCCATTTAAGACATCGGGTCAGAGTCACAGTGAACTTTTCTAACACATATTGGTTCCAAGAAATGCTGGAGACTCAACATTGTTACCACACAGCGAGAGAaaaaattagaataaaataaaaaaaaaagaatccagGAACTTCAAGGAAATAAAACCTAaaagtgcaaacatttttttttgtcatcttaGCTGTGGACTGgaagaaaatgtatcaaaagAAAGGCAAATATACCTGATACAATGCAGGTCTAGACCTCAGTTTAACTATAGACCAGTATGTCTGACTGAGTGCTGTATGAAAACATCTATACCTGCTGAATACAGTGCTTACAGGGTATTTAAAGGAGATAGACGCATAAAGTGCTACGTTGAATTGGAGTACAGTGTACAAGTNNNNNNNNNNNNNNtttttttttttttttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110628 lncRNA downstream 836656 30961703 ~ 30962096 (-) True G88643
TU110527 lncRNA downstream 1235952 30525746 ~ 30562800 (-) True G88562
TU110503 lncRNA downstream 1373200 30425304 ~ 30425552 (-) True G88545
TU110368 lncRNA downstream 1851212 29888445 ~ 29947540 (-) True G88435
TU110362 lncRNA downstream 1957213 29838518 ~ 29841539 (-) True G88434
TU110747 lncRNA upstream 23170 31859409 ~ 31859833 (-) True G88742
TU110768 lncRNA upstream 152535 31988774 ~ 31989050 (-) True G88762
TU110805 lncRNA upstream 258463 32094702 ~ 32094939 (-) True G88795
TU110848 lncRNA upstream 856032 32692271 ~ 32692496 (-) True G88831
TU110885 lncRNA upstream 1834228 33670467 ~ 33670919 (-) True G88866
AMCG00021828 mRNA downstream 448384 31310586 ~ 31350368 (-) True AMCG00021828
AMCG00021826 mRNA downstream 573371 31221983 ~ 31225381 (-) True AMCG00021826
AMCG00021830 mRNA downstream 666572 31129633 ~ 31132180 (-) True AMCG00021830
AMCG00021831 mRNA downstream 690106 31093408 ~ 31108646 (-) True AMCG00021831
AMCG00021829 mRNA downstream 705382 31058059 ~ 31093370 (-) True AMCG00021829
AMCG00021848 mRNA upstream 175203 32011442 ~ 32018134 (-) True AMCG00021848
AMCG00021847 mRNA upstream 195449 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021846 mRNA upstream 210871 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021849 mRNA upstream 231026 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021845 mRNA upstream 259286 32095525 ~ 32097519 (-) True AMCG00021845
TU110664 other downstream 666567 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 910540 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 1374140 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 2055944 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 2726992 29069201 ~ 29071760 (-) True G88288
TU110795 other upstream 227146 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 2510749 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 2510749 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 3538777 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 4107513 35943752 ~ 35946984 (-) True G89368

Expression Profile