RNA id: TU110768


Basic Information

Item Value
RNA id TU110768
length 277
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G88762
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 31988774 ~ 31989050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGAAAGGCAGACTGCCCCGTGCAGCGCCGGACTCAGATGTGTGTGGACTCTCGGAGCTTGGCTCTCCTACAATTACGTCTGTTTGGAGATTCTTAGCAGGGGAGCAGCTACTCGTTCCCGGTGACCGGTCCTCTGCCACCGAGCGCGGGGCTTCGGGAGGGACGCCCATGGAGGATGAGGGAGGAAGGGGACACCCGCCTAGCCAGATCAGCCGAATCAACCTTAGCGATCAATGGGGAGTTACAGATGTCGCAGCCAGTTCGCCCTCACATCCA

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110747 lncRNA downstream 128941 31859409 ~ 31859833 (-) True G88742
TU110741 lncRNA downstream 152535 31798752 ~ 31836239 (-) True G88736
TU110628 lncRNA downstream 1026678 30961703 ~ 30962096 (-) True G88643
TU110527 lncRNA downstream 1425974 30525746 ~ 30562800 (-) True G88562
TU110503 lncRNA downstream 1563222 30425304 ~ 30425552 (-) True G88545
TU110805 lncRNA upstream 105652 32094702 ~ 32094939 (-) True G88795
TU110848 lncRNA upstream 703221 32692271 ~ 32692496 (-) True G88831
TU110885 lncRNA upstream 1681417 33670467 ~ 33670919 (-) True G88866
TU110890 lncRNA upstream 1771222 33760272 ~ 33760620 (-) True G88871
TU110892 lncRNA upstream 1772192 33761242 ~ 33761474 (-) True G88873
AMCG00021828 mRNA downstream 638406 31310586 ~ 31350368 (-) True AMCG00021828
AMCG00021826 mRNA downstream 763393 31221983 ~ 31225381 (-) True AMCG00021826
AMCG00021830 mRNA downstream 856594 31129633 ~ 31132180 (-) True AMCG00021830
AMCG00021831 mRNA downstream 880128 31093408 ~ 31108646 (-) True AMCG00021831
AMCG00021829 mRNA downstream 895404 31058059 ~ 31093370 (-) True AMCG00021829
AMCG00021848 mRNA upstream 22392 32011442 ~ 32018134 (-) True AMCG00021848
AMCG00021847 mRNA upstream 42638 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021846 mRNA upstream 58060 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021849 mRNA upstream 78215 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021845 mRNA upstream 106475 32095525 ~ 32097519 (-) True AMCG00021845
TU110664 other downstream 856589 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 1100562 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 1564162 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 2245966 29730077 ~ 29742808 (-) True G88405
TU110186 other downstream 2917014 29069201 ~ 29071760 (-) True G88288
TU110795 other upstream 74335 32063385 ~ 32069464 (-) True AMCG00021849
TU111038 other upstream 2357938 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 2357938 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 3385966 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 3954702 35943752 ~ 35946984 (-) True G89368

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012343 True 322 misc_RNA 0.58 1 NC_007124.7 825904 ~ 826225 (-)
grasscarp (Ctenopharyngodon idella) TU44963 False 543 lncRNA 0.47 2 CI01000005 6398318 ~ 6477075 (+)
rainbow trout (Oncorhynchus mykiss) TU1930575 True 334 lncRNA 0.56 2 NC_048584.1 34626718 ~ 34683245 (+)
eurasian perch (Perca fluviatilis) TU264789 True 291 lncRNA 0.59 1 NC_053130.1 19071050 ~ 19071340 (+)
striped catfish (Pangasianodon hypophthalmus) TU63458 True 451 lncRNA 0.56 2 NC_047597.1 27530679 ~ 27532958 (-)
bowfin (Amia calva) TU63458 True 1247 lncRNA 0.50 3 CM030126.1 8357450 ~ 8360962 (-)