RNA id: TU110786


Basic Information

Item Value
RNA id TU110786
length 2102
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G88776
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 32065283 ~ 32067407 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAATATACTATGTTCTACctttacacaatattacaagggTAacacattacagtgaataaaatgtaGGCGTAAGAGAAGAATAGAATGGTCTAAATGTATAATCCAAAtgtcttaaatatataaagggATGTTGAAATGGTATGTGTTTTTAAGACCCTGAGGCATGATAAggtggttttattatttattttgccattatgCATCACTTACAAgcatttggattttgttttccatatgaaaatacatttgaacacaatACTGAGAACCAAGAGGAAAAGCACTGTGAGAAAATGTTAGTGGATTCTTGATTCTACTAGCATCCTAATGTTGTGCAATATACATGCTTAAGGCAACCTGAAAAGTTAACAAATTGGATGGTTTGGTTCAGCAGAagccacattttaatttagttttaattatcatttgtaACTGTTTCTCATTAATTTGGAATTTCAAATGATATGCCAGTTAACATTTGGTAGAGTAGATGGAAGATTGGTGAGTAGCATTCATTATcacttaattataattataaaatttgAATTGCCAattccttttttccattttttcacCCCAACTTGGAATTGCAAACAATAGGACTGGGCTCATCACTGCTGTGACTTTGGTACTGCTTCAAAAGCAATCTGACAAAGCATGCATCCTCCAATTGTCACAATGTCACAAAGTTATCCActatttttcacactgcatgCCCAgagtatgtatatgtatacagaaTGTGTACCATTTATCACACCATTCAAAGGATTTGATGCAAATGGAACAGATAATACACTGAATTAAACAGGCACCAGATCAGCCACCGGGGTTTCTCATGTTcagcaaaccaaaaacaaattgtcCCCTGAATAACACCCCCCCAAAGCAGTCATTGTGCAGTGTCATCTGGGAATTCCTTTCCAAGGCTAGCAATGACATAGGCTGCATTCAAGACCAGCTCATCCAACCTATAGCATACACTCAGAGCAAACAGGCAACCCCACCAGTTTCTTTTCACCACAAAAAATCTGTAACAAAGTTACTGTGGATTTATGCACAATAGATTAGATACTAGCCTCAGGGCTTCAGTGGGAATCGTACCAAAGTAATGAAGCAAGCCAACCCCCCCTTTCCATCTTAATCCCCCCCTAGTAAAACTCAAGGAAATGTAGAACTCCAAGTAGCTTCTTACCAAAGAAAGATTGTATAGCTTGAGGATCCTTtgaatacctttttttttttgcctgaaaTATCACATGAGGTTTGGAAATGTGCTTTGGAAGACTCTCAGAAATCTACACATTCAGTATCATTGACACAGAGTGGGCAGGGCAAATGTTTGAAGCAGATACAATGCCAACTTTCAAAGTTGGCAGGATTTTTTATCAAAAGTAATGCACAGCAAGCAATATGCTATTAATACAGGTTTTCTATTAATATATTCACAGTGTGTAAAATGTGAGCTCaagtaaattgttttttttgacATTTGTCTCAATTTTGGACTTTGTTTCTGAaaacctgaatccaactgattACATTCCCCACCATATACAGTATGTGGTTATCCCACATTCCCCAAATGACTGAATGACAGCCTATGCTATATATTCCatgtgttacattttcaaagtacaTTAACCACTATGTCCCTAACAACATTTTTATGCATTGTTCAGTTGGAGTTTCTAGGATAAGTCAGTGCTTACAGATAATGTTAAACATTCATACCCGGCAGTGAACTTTAGTCTATTTTCTGGAGTTAGAAAATACACAgcagtacatttttttcccaaaaagCAGAACATCCGTTAAATGTTTGAGGATCTCCTGAGGTGCATTGCAGTAAATTATACTAGTCTTTTCATCATTATTCAGTTAAAGATCACCTAACTGCAGCAACTGAACAACTGGCTTCTTCGTGAATCTGTACAAGAGACTGCCTCTCCTTTGCTTGATTAAAAGGGAAAGGATGATTGAAGACCACTGTGATTAGCTGTGacgttttctttcttctccagACTCGACGCTTCGTTTTCTCTCCGTAGTCTCTGGATTTCACTGTTTATGTCCAGTAGTGTTTTGGCAAGCTGCCTGTCTT

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007399 nervous system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110780 lncRNA upstream 36117 32028958 ~ 32029166 (+) True G88771
TU110767 lncRNA upstream 76232 31988784 ~ 31989051 (+) True G88761
TU110752 lncRNA upstream 78753 31894467 ~ 31986530 (+) True G88746
TU110748 lncRNA upstream 205148 31859921 ~ 31860135 (+) True G88743
TU110746 lncRNA upstream 206246 31858835 ~ 31859037 (+) True G88741
TU110850 lncRNA downstream 737911 32805318 ~ 32805877 (+) True G88833
TU110855 lncRNA downstream 809992 32877399 ~ 32877672 (+) True G88838
TU110886 lncRNA downstream 1643367 33710774 ~ 33711053 (+) True G88867
TU110891 lncRNA downstream 1693836 33761243 ~ 33761474 (+) True G88872
TU110901 lncRNA downstream 1777689 33845096 ~ 33845340 (+) True G88882
AMCG00021842 mRNA upstream 236 32059116 ~ 32065047 (+) True AMCG00021842
AMCG00021840 mRNA upstream 84255 31954587 ~ 31981028 (+) True AMCG00021840
AMCG00021841 mRNA upstream 194258 31870072 ~ 31871025 (+) True AMCG00021841
AMCG00021837 mRNA upstream 302280 31755353 ~ 31763003 (+) True AMCG00021837
AMCG00021834 mRNA upstream 354206 31704641 ~ 31711077 (+) True AMCG00021834
AMCG00021843 mRNA downstream 14727 32082134 ~ 32092685 (+) True AMCG00021843
AMCG00021850 mRNA downstream 71165 32138572 ~ 32146026 (+) True AMCG00021850
AMCG00021844 mRNA downstream 125870 32193277 ~ 32219473 (+) True AMCG00021844
AMCG00021851 mRNA downstream 350894 32418301 ~ 32433938 (+) True AMCG00021851
AMCG00021852 mRNA downstream 432816 32500223 ~ 32508325 (+) True AMCG00021852
TU110433 other upstream 1671062 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 1671062 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 2683010 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 2683010 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 2999944 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 2859146 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 2970432 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 3143726 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 3897164 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 3897164 35964571 ~ 35967384 (+) True G89299

Expression Profile