RNA id: TU110885


Basic Information

Item Value
RNA id TU110885
length 453
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G88866
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33670467 ~ 33670919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cggcatgaggtccgtgtggtttggaacaatggcagtccggttcggcttgtccaagaacttccactcagtcgatgcacctggaagttggggtttcgcgaatgtagagtcttttccaaacagattttccactggtttgaaggctccaaggttgtgcacaaaatcttctttgtaagcagggtttccaccatagttacttgaagacaaagtctttaaagaaagcagggccctgttcgttccaagggtcaagtttcttaagactcaaatagctatttaaatgactgaacactttcgtatacagtcgacttagtcaattgtccagctgtataactccactgatcaggtgggcacaggcgggcatgcacagtctgtaaagttctttatttaataaagtcctttaaaagaattcttcgtacggctcaatctccttctcccagtttaactcttcttttgccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110848 lncRNA downstream 977971 32692271 ~ 32692496 (-) True G88831
TU110805 lncRNA downstream 1575528 32094702 ~ 32094939 (-) True G88795
TU110768 lncRNA downstream 1681417 31988774 ~ 31989050 (-) True G88762
TU110747 lncRNA downstream 1810634 31859409 ~ 31859833 (-) True G88742
TU110741 lncRNA downstream 1834228 31798752 ~ 31836239 (-) True G88736
TU110890 lncRNA upstream 89353 33760272 ~ 33760620 (-) True G88871
TU110892 lncRNA upstream 90323 33761242 ~ 33761474 (-) True G88873
TU110902 lncRNA upstream 174195 33845114 ~ 33845452 (-) True G88883
TU110940 lncRNA upstream 305161 33976080 ~ 33980828 (-) True G88918
TU110961 lncRNA upstream 506128 34177047 ~ 34177481 (-) True G88939
AMCG00021845 mRNA downstream 1572948 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021849 mRNA downstream 1601352 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021846 mRNA downstream 1622883 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021847 mRNA downstream 1632888 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021848 mRNA downstream 1652333 32011442 ~ 32018134 (-) True AMCG00021848
AMCG00021861 mRNA upstream 335740 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021860 mRNA upstream 508673 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021864 mRNA upstream 571946 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021865 mRNA upstream 580755 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021863 mRNA upstream 592896 34263815 ~ 34274711 (-) True AMCG00021863
TU110795 other downstream 1601003 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 2538282 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 2782255 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3245855 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 3927659 29730077 ~ 29742808 (-) True G88405
TU111038 other upstream 676069 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 676069 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 1704097 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 2272833 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2744120 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile